MmuINT0162711 @ mm10
Intron Retention
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97578530-97590939:-
Coord C1 exon
chr16:97590820-97590939
Coord A exon
chr16:97578657-97590819
Coord C2 exon
chr16:97578530-97578656
Length
12163 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
ATTTCTTTCTCCTTCAACAGTTC
3' ss Score
9.94
Exon sequences
Seq C1 exon
GGGACAGCAACTGTTCTACGTCTGAGATGGAGTGTGGGTCTTCAGGCACATGCATCAGCTCTTCTCTCTGGTGTGACGGGGTAGCACATTGTCCCAACGGAGAAGATGAGAACCGTTGTG
Seq A exon
GTGAGTTATCCCTGGCCCTGGAAGCACTGATCTCTTAACATCTGCCACAAAGTGGCAGTTGGAGACAGCCAGGCACGGTGCTGAGCCCAGGCTCAGGATTGTGGTTTTGGCCCTGCAGCATACACAGTGATGGGCTCAGTAACTCAAACACACATGTTCCCAACTGCCTTTGGATGACAGTTAAAACAAGCAGGCTGTTGAAAATAAGTTAGGGTGCACTATGCTGGGTTTTTTTATTTTTTTATTTTTTGGTTTTTCAAGTCAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTAAACTCAGTAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTGAAGGCATGAGCCACCACTGCACTATGCTGTTTTTAAAATGAGTGTCTTTAAGATTGTGCCCAGTGTGACAGCAGTGAACAAGTATATTTGACCCGTCCAGCAGGTCCAGTTATTGGAGGGTCTCAAGGGGACCTTCTCCTAAGAACCAAATTGGGGGGGGGGGGGAGAGAAAAGATGGACACCAAGTACGAGGAAGGACATGGAACCATTCTGAATAACATCAAGGTGTCACTGTGTTAGCAAGGCTCAAGGCTTAAATGCACAAGCAAAAGGGGACGTACTTCTCAGCAGGAGGAATGGGGCAGCGGAAATTTTTCTTTTGGCGACTACTCGGGGAAGCAGGAACTTGGTGGTATCAGGGTGCATCTTGAGGTCAGGACATCCAGTGCTGACTTAGGGCTGGAACCATCTGTGGTTGTTCTCGGAGTGGTGCATAGGTGGCCCACTTTTGACCCCCTTTTCTTCTCGGGGGGAGAGGCCCAATTCAGAGATCAGGACAATTGTGTTGTCTTAATAGCTCCCAACATCTCCCCCGTTTTAATATTTTTATAAAGGCATATTGTATAATAAATTTGTAGCCACGTTTTTAACGACCACCTAAACGTCTGTTTGCTCACCGGGTGATTCTCTAAAACCACGAAGGACACAAAGACAAGTCATCTATGAGGCTTGAATTAACGGTTTCAGTCTGTTGGGTATAACCTGGGCTAGCCAAGGGATTTAGGAACAAAGCAAGCTCCGTGGGTAGAGGTAGAGGTCTGATCCCCAGTGTGCAATGTTAGGGGCCATGTACAGGATTGACTCTCAGGCCCACAGATTTTTACCCAGAGTAACCCTGACCTGCTCCCATGCCGTTTTTCCTGGGAGAAGGACCCTAGGGCACTCAACCTTCATGCAATCAGACATGCCTCTCAGAGACGTCTAACAGCTTCCAGACTAATCTCTGTGCAGTGCTTTAGCCTTACAACTCTCACGGGCGATGGCTTCAAGTTCCAATTTTTCGATGTGTCTGTCTTGGGATGACTGTTTATTTTCCAATGTGGCGAGAATGTATATTACCATGTCGGAAGCACAGACTACGGCAATCTATAAATGATTCGTGGCATGAGACTGATGGCCGAATTTAGGGGGAGGGGAATGATCTTACTTAAGCATTTTATGGAAATTGAGTCTCTCTCCCCGAGACGAGGGTGATGAAGTGGTATCCACGTCTTACTCTTCTCCAGTAACCTGCTTGTTATCGCCAACGTCCAGCCAATAGTAATGAACTGAAACAGATGCGCTTGAAAGAGATGAATCAATTTGAGATTTAACAAATCGGGTCAATTTCTGAAATGCCCAAGGACCAAAAGAAATCAATAATAGGAGTCCCAATAGGGGCCCCAAAAGGGAGGGCAATAGGTCGAAAGCCAGGGGGAGGTTGAAAACCAATTTTGGTACCATGACTCTTGTTGTTCTCTCTCTCTTTTTCTTTTTTCTAAACTGGCAGTAACTTTGGCAATGCTATCTTTAATCCAGTTTTATCAACATATACACAGCATTCTTCCTTAAGTGCAGCGCATAAGCCTCCTTGTAGAAAAAGCAAATCTAACCCCCTTCTATTTTGAAGGGCAACTTCTGAAAGGGAGACCAAGGAATCAGTAAGATCATCTAGGCCCCTTTTTATATTCTCTATATCTTGGCTAATAGCCTCATTGAGCAGATGGTAATTGCTCACGTTCTGTTGAGACGACACAAGGGCTGCGATTCCGGTCCCGGTCCCAACAGCACCCAGGCCAAGAAGGACCGCAAGGGTCAACGCCGAGATAGGCTCTCTTTTGTGGCAGAATGGCAAGGAGGCACCTCGGTCCCAAAACTTCAGTAGGTCATCTGACTCATGAATACTAAAATTTGGAAAAAGCTGAACCAAGACACAATAATCTCTATTATTTATAAAATCTTGTATAATAATGTACCGTGTAAGGCCCATGCCAAAAAGGTATCATTTGGGGCAAGAAGATAAGAAAACCCATTTTTATTTACTCTAAACGTGTTATTGCAAATCTCTAGCAAGGAAGCATGCCTGGGCTCAACACAAAACTTCCTATCCCAGAGAGTTCTGTCAAGGTAAGCTGAACTGACTTGAAGGGGAGCTGCCTAGCATCTGAAAGCAGGGTAAAATTTCCAAATAAGGCTATGTCCTCATAAAAGGGCGGGGAAGCAGAAAAGCACATCCAACAATCTTCAAATTCTGACACATTATCTCTTTGTGTCTTATCCAGCAAGGCTAAAGCAGAAGCATTCAATATAGACCACAGTAAATCAGTGGAAAAGGAGGCCCCCTCAGGTAGAGTGGGCTGAAATAGGGTCACAGCACATCCTGGGGCAGGAACAGGGGGGCGGGTACCTGGAAGTTGGGGATTGTTTGGGGGTTTAGGGTGATGTAATTGGGGGTTAGGTCCTATGGATGCTTTATGATTATTAGGGATGGTTTTAAGAAGCTGAACCTTAAAGGTCAGGCCATTATCATAGTTATCTTGATACAATCTTAGGCCCCAGGTGAGAGGGCGAGAACTTTTCCAAGCCTCTAAGTTCCTCCTCTTAGCAGTAAATTTTAGGATCAGTGGATTACACCATCCCTTAGTGGGCTGTAAGGGCCAGGCTGCAGGCCAATGTGTTGAGGAAATTACTGTCGCATCTGCCCCGGTATCCAGGAGCCCTTGAAACTGTTTGTCCTCTATAAACAAAGTCATCATGGGCCGTGAATGGTTATTTTCTGTGCCCAGTAGACTTCTGAGGATCCCAGGGAGGATGGTCCTCGTTCCTCTTTCATATAAGGGAAATGGCCGAATAGTGGGAGTGCTAGGGCTTGGGCTATGCGCTCTCCAGCCCTAAGGGTAAGTGGTCCCTGCATGGTGGCGACTAAGATTTTTATCTCCCCATGGTAGTCGGTGTCAACCACTGTAGGAGTCACTGTTAGGCCTTGTAAAAGTCTGGACACTCGGCCGATGACGAGAAAAAAATGTCTTTTGGGGAGGGGGCCCAAATTCACCTGTTTCAATGACCACTGTTCCCTCCTCAGGAGTTATAATCCTGGTGGTGGAGGAATACAGGTTCAACCCTGTGCTCCCTGCCGTGGCCCTGCACAATCTCCCGTGGGGGCTAAGGGGTTGTCTGCAGTTGTCATCAGGGGAGATGGGCTCCGCAGGGGGGGCCCTCTGGCCGTTTCCCTGGACCACAGGGAGTGGGTGGCCCGTCAATGTCAGTCTTAGATCGGCAATCTTGTGCCCAATTGCGACCTCTCTTTCACTTAGGGCAAAGACTGGGGGGGGGATTTTTGTTGGGTAACAGGCATGGTTGAGACTAGGGTGCTCTGTCTTTGTGTAGGGCATCCTCTAGCAAAATGTCCAGGTTGGTTGCATCTATAGCAAGTTTTTTCTCCTTTATTTAGTTGTAAGGCAGCCCCAATAGCCAGGTTGATAGACTTAGAAACTTGTTGGGAAAACACATCTACCTCATTACAAAGCTTGATCATACCATTATATCTAAACTCTTGGGTTTACCTCTCAGGGCAGCCCTACATGCTGAATTGGCGTTTTCAAGAGCAAGTTGTCAGACTAACAGACCCTCACTTTTCTCAGGTCCCAAAATTCTCTCAGCTGCTTCTTGCAATCTGGCAATGAACTGCGCATAGGACTCTTGGGGCCCTTGTATAATCTTTCTATTATTTGCAGCCAAATTTTCTCCTCTGTCCACAAACTCTGACTTCCAAGTTAAATATTGGTCTCTAGTGAGGACAGACTGAACAACTTTATTCCATTCATTGGGTATCAAGTAGCCTTCTCCTGCTAAACCTTCTAATATAGATACTGTGAACAGGGCATTAACCCCATAATTTTTGACTGCTGAATGAAGACCTTTTACATGTCTCAGTTTTAGCTTTTTGTAGCCTGGTTGGCTGTTGGTGTCTAACCCTTCATCGGGGGACATGCCACCCTCATCGGAATCAGAGTTTGCTTGATCCTCCTCTTCATCACTCTCTGGTTCCCCCTGATCTTTATCAGAGGAGCCAGTGGGGGGGGGGGTCCTCATGACCTGGAGTAGCCTGATGGGCTGGAGCTCGAGTGAGGACAGGAAAAGCCATTTTTTTATTCCCTTGTTTCTGAGAGGGACCTTTGCGGCCAGTTTGAGATTTTTTTTGAGATGGGACCTTGAAGGTTCCCCATGAGGGCTCTTTGTAGACTCTGAGTCTCTAGGCTGAGGTCTTATAGCTCCTTTTGAAGTCTTAGAACATTTTTAAGATTGGTAATCTGAGTCTGAAGCTCTCTCTTAGTTTGAAGTAATCGCTGAACGGATGGAGAAGCCAGTGATATGGGATGAGCAGTAGGGGAAATGGGGGGCAAGTAAGGAGGGGGTGGTGTTTAAAGGGCTCCATGGCAACATAGGCACCGGGTCCCGGACCATAGCGGTCCCGTTCATAATTGAAAGCCTCTTCATCAAGTTCCGCCTCAGAGGAGGAATCAAGGGGGTCATTTGACAATTCTTTATATAAAATCGGATAAGTTCTCTTGGGTTTTGTTGAGGGCTGAAGAGTACTCTTTTCTCCTGAGGCAGACCTAGCCTGGGGAGCAAGGGGAGTAGGGAGGGAATCTTTAGGAATAGGGTCATCAATTATCAACTATGGCTGAGGCATTGGCGGTTTGGTTTCACTTTTACGGGACAGCGAATGGGAGTTTTCTAAAAAAATCTTCAGTAAGGGCTAAGAGGCAGGCGCCTTCTCCGCCCTCTTCTGACTGTTTAAGGAGGTCTCTGACTATTCCCCAATAGCTAAAAAAGGACTCAGGGACATCTTCTCCTTGTTTTATCAAAGCATTGATATCTTTGCCTACTTTATTCCAAGTTAAAGGGTGTATTTCAGGACCATTCAATACCAGCCATGGACATCTCTCGTCCACAAAACAAAAAAAATTTATTAAATCCTTTTTCTTAACTTTTATCCCTCTCTCCTTAAGAGACCCCTTCATCTCTTGAATAAAAACTGCCTCTTTGGACAGAACCTTCCCCATGGTAAATGGGACAACAACTGAATGCCTAGGCTTACCTCTCTATGTCTGCAACACTCGAGCAAAGTGGCGGGGAACTGTCTCACTGTCTGCATGGTACCTCTTGAATCCGTTGTCCGGAGGGTGGTCATGCCTCGTACCCCACGTCTGGTGCCACTTGACCCGTCCAGCAGGTCCAGTTATTGGAGGGTCTCAAGGGGACCTTCTCTTAAGAACCAAATTGGGGGGGGGGGGAGAAAAGATGGACACCAAGTGCGAAGAAGGACATGGAACCATTCTGAATAACATCAAGGTGTCACTGTATTAGCAAGGCTCAAGGCTTAAATGCACAAGCAAAAGGGGACGTACTTCTCAGCAGGAGGAATGGGGCAGCGGAAATTTTTCTTTTGGCGACTGCTCGGGGAAGCAGGAACTTGGTGGTATCAGGGTGCATCTTGAGGTCAGGACATCCAGTGCTGACTTAGGGCTGGAACAATCTGTGGTTGTTCTCGGAGTGGTGCATCGGTGGCCCACTTTTGACCCCCTTTTCTTCTCGAGGGGGAGAGGCCCAATTCAGAGATCAGGACAATTGTATTGTCTTAATAGCTCTCAACATATATTTGCTTTTTTCTTTAAATTATTTACTTAATAACTGACAAGCTAAGATGTGTCACGTTTGTCTGGTATAGTGTGATGTCTCTATACATGTACCCCCACGGATGGGGCAGTCACGCTGTTTAACATATATCCCCTGAGCTCTTATGTTTATGGAGGACTTGTGTGGTCTTTCTTTGGATGGACAGTGTGCTGTTAGTACTTACCACCATCTTGTACTAAAGATCTCTTGAACTCATTCTTCCTGTGTAATTAATACTTTGTGTGTTTTGACAAGCTGTCCCCAACCACTCCTAGTGAGCAGTACTCTGACCTCAGCTGCAGTGAATATGACTCCTGGATCCCATGTCTTTGTGGTGCTTCCCTTTCTGAACTGACAGTGCAGAGTTTCTCAAGGTCGTTTGTATTGTCACAAAGTGGCAGGGTTCCATTCTTTTGATAGCTGGATCCTAGCCCGTTGTGTGCATGTAGCACATTTCTTCGTTCGTGCACCAGCTGATGGATGCTTAGGTTCCTTTCTAGAAGCTGGATTGCTTGATCATGTGATAATTCTGTCCTCATGGTTTCAAGAAACCTCTATATTGTTTTTCATCCGCTGGCTAGTCACATTATAATCCCATTGCTGATTTCAGAGGCTCTCTTCTCTCTTCACCCTCACCAGCACAAGTTATGTTAAAAAATTTTAATGACAGCCATTCTGTTATAACAGGCACAAGGTGATATCCCTTTGAAGAAGTTTTAATTTTGTACTTTTAAAATTAAAATATAAATTTACTTCCTATGCGTATGGCAGGAACGGCGATGCTGCGATGCATGTGTGGAGGTGGAGGACAGCTTATGGGAATTGGGTCTCTTTTCACCATGAGGATTGTGGGAGATCAAATTCAGCTTGATGGCATGCTTCTTAACCCACTGAGTCTTCTTGAATGGATTTGTCTATCTTGTGCTGTTAATTTTTGAAGCTGACTTCAAGCACAGTCAGGAGACTGGGCCCAAGAAAGACACCTAAGGGGCAGGGTTGTGCTAATCATGTTCCAGAGTCTGAAGCTAAACTGTTTGACATCCTGGCATTGTGGGCAAAGCCTGCTGTCTGGCTGCTCCATTGCTGCAGACCCTCTGGGTTCCTTTGTCTGTGTGGAACGAGTCTCTGGGGCAGGTGGACAAGGCGTCGGCGGGTGACAGACACACCAACACACGAGATTGTGTAGAATCTGAATGTATTCTCACAAAGTGAACACCAGTCTTATATAGTAAAGAAAATACAAGGGGTTGGAAGTCACAGCAGGCAAGGTACATTGAAGTTACCTGATACAAAACAAAGGAATGACTACAAAAGGACTTACAGGAACCAGGTAAATGTTTACAATAAAGATAAAGCAGTCTTACCTAGGGTCAGCTTAGTGACAGGTAAGGATTTCACACTCTAGTGCTATACCTTTGATCCTTGTGAACAGGCTAACACCAGGGGTTTCTGCTCTTAGCAGACCTCATGAATAATGCAATATCACAACCCCCCTATCTCCTAGGCCTTGCTAAATTCTTATATGAGTGTAACTTTTAAGTAACTGGAGACTCTCCATTTGTCAGAAGAATTTACCAACTTGCTTCTAATATGCAATGTAGCCTGTACTGAAGATTTCTATTTCAGTGGGATTCCCTGCCTCTTTCATGGTATTCCCTTGTTTGGGTGAGATTTGCTACTGTCCTTAGTAAATATTTTGCAGACCAGCTCTGAGCTACTGGCTCCATCTTTTGTAATGCTTAATTAGTTACCTAATAGGTTAACTTCCTTACTGCATTCTTACAGGATTCTAAGCTTGGCTTCTGGGACCTTGGAACATTGGGGAGACTTAACTATAACAGAATTTAATCTTAAAGGGCATTTATAATAAAATATTAAAAGAGAGCTCGTTGTTCCATACACCAGACTAACATGGGAATAGAGTATGAGTATATGGGTAAATGAGAACACCAAAGCTCCAGGAGGTGAGTTTCCTTGAAACTCTTTTCCTTGTTGAGTGCTTAAAGACTTTTCAGCCTGTCAAGCAGACTTGACCAGAGTGCGTGGCATTTCCGAGTGTGTGTGGCATTCCATGTTGAAGGGGGGATGAGATGGTATAGACCCTGTGTTTCCCTGGCTCTGCAGCTGACAGTGAGTTGCTGTCTCTGCCTTGCAGCAGCTGTCCTGTCCTGCTTTTCTGCCTTTCTTGGAACTCATTCCCCAAGCACTGCCCATGCCCAGGGGCTGAGGCTAGCCATGGCTCCTCTCTGACTTTCTGTTAAGTTCAGATGTGTCCCAACCCAGGAGCCATTCTCCTAAATAGGAAGTTCATATTGCTGACCGAATCTCTACAGGAATCTCCTTAGCTTTGCTGTCTCCACCCAAATGATCTCCAGTCATCTTAGAATTTGGGGTAAAAAAAAAAATCCCACAGACCTAGTTGTCCAAGGTGGGTTTTATTTATTTAGGGCTGACTTTGGGTGGGGCAGCTTTCTGCTGCATACCCTCCTCCATGCCCTGTGTGCATTAGATTCCTTGGCGTTGGTCTTGTCTCAAAGAAATTCCCAAGGGGCCTGGCTGTTTTCACTTGAGTGGACTGATGCCTGTTCTGTTCCCCCTGGCTCCTCAGCTTGGATGTGTGCTTGGGAGATACAGTGCCTAGAGCTTAAGATAACTCTTTCCCTTTCTTTGGGTGGCAGCAAATGTTTTAGGAAAAGAGGGCAGGGTCTATGTTGAGAATGGCTAAGGTGTCATGTGCAGTAAATACCACTCCGTTTCTGTTCTTGTCTATATATGAGCAACAAATTTTCGTTTCATTTTATTTCAACACTAGGTGGAAATTAGGACCACATGGAAGGCAGGCATTCTACCACTACCCTGCATTCCTGTGCATATCCTACTTTTTTGAGGCAGGGTCTCATTAAGTTACCCAAGTTGATCTCAACTCATGATCTTCTGAGGTCTAGATTTCAATGCCTAGGATGCAATACTTAGGTTGTGAGTAGGCAGTAGGATTAGCACAACATGAGCTGCTAGGAAGGCATTTCTGTTTGAGGTTTAGGTTTGTGCAGTTTATAATTTTCATATAAAAGGGGCAGATGACCTTGCATGGTGTATGCCCGTATAGATGGGAATAGCATACTTTCACCCTCTCCTTCATGTTTGCTCTTAAATGTGACATGTTTAAGAATGTGCATTGAAACTGGGCTTGGTTGTGCATGCCTTTAGTCCCAGCATTCATGAGGCAGAGATGAACTGATCTCTGTGAGTTCAAGGCTAGCCTGGTAGCCTGGTCTACAAAATAATTTCCAGCACAGCCAAGGCTGTTACACAGAGAAACCCAGTCTCAAAAAGCCAAAAAAAAAAAAGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGAGAGAGAGAGAGAGAGAGAGAGTGCTGATGTGCATGACACTTTCTTCCCAAGGGTAGGGAATGAGTGAACACCAGAACCTACCAGTTCCTTATTCATTTTACTGAGTCTTTCTCAAAACTGTCAGAAAACTTGAAGAGCTGTGAGATGTGACTGTGATCAGCAGCCCTCTTCTAAGACATTGACAGAGCCCATCCTAAGTGTCCTCACCATAGACAGGAGAAGGATACACAGAAGGAACCCAGCTCGAGGAAAGGAGGCAAGCATGCTCAATTGGTAGTGGAGATGTGTCATAATGGACACTAACCACCTTGGATCCCACAAACATAAATTTTGAGTTATCACTTATAGCTCTGTAAGAATTAGGGGAAAAGTCCTAACTCTTAAAATATCTCCTTGGGAGCTGTACATACACCCTGATTGCCCTGCCCTAAGCCTCTTGTTCCCTGCATGTTCTTTTCCCTCAGTGTCCCCTGGCAGTCTCAGATCTTTGACTTAGCTGTTCCAGAATGTTCTGTGCTGGATGTTCTGTGAGGTGTAGACCTTTTGGATTGAGTCGGTTCTTTTTGCAGTCTGTGATTGGGATTTTTGTATGGCTTTTCATAGCTTTGTGGTTTCTCTTAAGTACTGACTGACATCCTATTGCCCAGCTTGTAGCAGAGTTTTATATATCCACTAAACACACATGCTCTGTGGCTTCACTCATCCCTGAAGTCATAGAAGACAGTTGGGGAGCCGGGCATGGTGGCTCACGCCTTTAATCCCAGCACTCAGGAGGCAGAAACAGGCAGATTTCTGAGTTCGAGGCCAGTCTTGTCTACAAAGTGAGTTCCAGGATAGCCGGGGCTATACAGAGAAACTCTATCTTGAAAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAGCAAAACAAAAGAGACAGTTGGGCCCCAAATGATCACCCTCTGAGAGGGGACCCTAAGGTGTCAGGCTATTTGTCCAATGAGTCAGGGCCAGGTTGGAAGTGAGCCAGGGCTTGACCAGATCTTATTGTTTCCCCTGGTCATGTGGCCCTGTCTTTTGACAGCCAACTCTCTTTGGTGTGGTACTGTTTAGAAGATTCTTCTTGTAAACTCCTTATCTCCTGGGTGACCCACCAGGTACCTAAGAGTCTGCTCTGAGTTGGCCACTCTCTCAAGTCTATCAGATGACAAATCATTTGAATGCTGGGATATGCAGATCTCTCTAGAGATCAGAGCTGAGTAAGGAAGATCCTAGTTGCATCTAAGTATGTTAGTCTTTAAATGAAAGAGCTGGTGCCTTTTGAAGCAAAATGCAAATGATCAGTTCAACACTCAGGGACCTGAGTGTTCTGCCAGGGCATGGAATTTGGATGTGAGATCAACTTGTTCAAAACGGAAGCTTGGTAGGGACTTTGTGTTGCTCTGTGTTTTATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTAAACCAGGCTTGCTCAGGTCCCAAGGAATTACTAATCTCCCCCTTTTTAAATATTTTATTTTAAAATAGATTTAGAAAAGTATGTGTATGTGTATGTGTATTTCTCAGTGTGTGTATGCCACATGAGTGCACTGTCAGGAGGCCAGAACAAGTATGCATTAGATTCCCTGAAGTTACAGTAACAGGTTGTTTTGAGCTATCCTGACCTGACCCTTGGGACAGTCGAACAGGGTCTGAGGATCACCTGTAGAGAGAATGGGGGACAAGAAACATGAAGAATGGACAGCAAGTCAGGAGGTCTGATCAAGCTGGCACATTTTTATTATTCCCACACAGGTTATATACTCATAGAAGCAGGATATGGGGTAAGGGAGGTGGAGGGGGGTCACTTTGTTTCTGGGAGAATGCACCTGTTCTTTGGGGTATTGGTTAGGTAAAAAGCTCAGCAGGAGGAACAGAATAGAACGGGTTGCTAGGTACCTGTCTACAAGATCTAAAGCTATTTGTTCTCAACTGGGGGGCAGTACCACAGAGGCCAGGTGTTCTCAATTGTGCTATTACTTTCCCACAGAGGCCAAGACTTTGTACCAGTAAGCACTTATGGTTGACAAGGCAGTTAATGTTCAAACAAGGTTGCTCCCAACATCTCTAGGTTGCTCCCAACACTACCCAACATAGGTGCTGGGAACTGAACTTGGGTGCTCTACAGTGTGCTCTGTGTGTTCTTAATGACCCAAGTCATCTCTCCAGCCCTTTCTTAGGTTTTCTAGCCCAGACATTTCATGTGTTTGAGGTTGCCTTAAGCTGTGATTTTCCTTCACATTTTGTCATGCCTTCAAGGCTCATTCGTATAATGGCTCCTGTCAGAGCTTGATCCTGTCAGAGCCTGGCTCCCAGTGACAGCTGAATGACTTTCCACTATGACTCTGGCATGTTTCCACTCCTGTGGTCACTGACAGGCTGTGGGCCATTGTGAAGAATTTATGTCTGAATATCTGTCTGGAATTCCTTTAGAATGCTTTCGATCAGAGGAACAGAGAGATTCATGGTCCCTCTTTGTGTGCAGCCATAGCCTTAGGAAGAAGCTGTAATGGTGTGCATGGGCAGTGTTGGGGTAGGGCAACAATCAGAAGATACAGGTTTAGAGTTAAGAACTCATGGAACATTTCTTTCTCCTTCAACAG
Seq C2 exon
TTCGTCTCTACGGACAAAGCTTCATCCTCCAGGTTTACTCATCTCAGAGGAAAGCCTGGTATCCCGTGTGCCAGGATGATTGGAGTGAGAGCTACGGGAGAGCAGCATGTAAAGACATGGGATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385:ENSMUST00000000395:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.7)
A:
NA
C2:
PF154941=SRCR_2=PU(39.6=88.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types