BtaINT0150427 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021280 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr1:144226092-144227410:-
Coord C1 exon
chr1:144227315-144227410
Coord A exon
chr1:144226241-144227314
Coord C2 exon
chr1:144226092-144226240
Length
1074 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CCCCCCATCCCCTTGCTCTGACC
3' ss Score
-1.94
Exon sequences
Seq C1 exon
AGATGACCCAACCAGTCTGTTTGCCCAACTCCGAAGAGAACTTTCCTGATGGAAAATTGTGCTGGACATCAGGCTGGGGGGCCACAGAGGATGGAG
Seq A exon
GTCAGTGGTCTGAGATCCAGATTCTGCATCCAGTGTGCCCAGAACCAAGAGGCCCGGGTGCCTGCTCCCTATTGGTGTCCCAGTGTAACATCCCGCTGACATGTCATGGTCAGGAGGGAGCACAAACCCTCAGTCGGACGCTGAGACCTGAGAGGAGGGAGAGGCGGGGTGTACCCTGTGGTGAGCCCATAAGATGTGAAGGTCACAGTCTACAAACACGTGGAGTTAGAGGGGGTCCGTCCCTCTGGGTGAGGAGGGTGAGGCTGAACCACTGCAGATATGTTGTTACTTTCTGGTCGCTGCTGCAACACATGACCCCAAACTTAGAGGCTTAAAGCAACTCTCTGGACCACCTCACAGTTATGGCGTTCGAAGTTGTAAATCAATGTGTCTGGGTGGGGGCTGCCATCCTCCCCGAGGCTCTGGGGGAAGATCTGTGCCCCTCTTTCTAGCCTCTGGGGCCCCCACATCTCTTGCTCATGCTCCTCCTCCCCCTTTGCCGCCAGCAGCACGGTGTCCCCCAGTCTCTCTCTCCTCTCTGACTTCTGCTTCTTCCATCATCACATCTCCTTCTCTAGCCCTTCGAAGGACCCTTGGGATTACATTTAAGGTCCACCCACCCAGGTGTCCCCATCTCAAGGTCTTATCACATCCGCAAAGGCCCTTCTGCCACAGAAGGTGGCAGGGCCCCAGGTTGGAGGGTTGGGGCCTGGAGGACACGTTTCTGCTGACCACCCCCAGGCTCTACCCCAAGGCTGTGTGTGGGACCTCACGAGCCTCAGTTTCCTTCTGTTACCTGGGTTCAGGGAACTAAATGGGCTGGTGTAGTCGAGTGCTTGGTCTAGGATGGGCCCTGGGGGAGGGGTACCTGCTGGCTGTGGTTGCCCCATCTTCCCACACTGGCGACCTTAGGGAAATGAGTGGCTGTGGGATGAAGCAGGGTCTCCCCCAGCCCACCCACTAGGGGACAGAGCTCTAAGGCTGTCTACTGTCAGGCTGCCCCACCCCCAGGCAGTCATCTGAGCCCCTGGTGGGGCCCCCTCACTGCACAGACCCCCCCATCCCCTTGCTCTG
Seq C2 exon
ACCCAGGTGATGCCTCCCCGGTCCTCAACCATGCGGCCGTGCCTCTCATCTCCAACAAGGTCTGCAACCACAGGGATGTGTACGGTGGCATCATCTCCCCATCCATGCTCTGCGCTGGCTACCTGAAGGGTGGTGTGGACAGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021280:ENSBTAT00000028354:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.4=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCAACCAGTCTGTTTGC
R:
CAGCTGTCCACACCACCCTT
Band lengths:
238-1312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development