HsaINT0169714 @ hg19
Intron Retention
Gene
ENSG00000160183 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:11877]
Coordinates
chr21:43796650-43800321:-
Coord C1 exon
chr21:43800226-43800321
Coord A exon
chr21:43796796-43800225
Coord C2 exon
chr21:43796650-43796795
Length
3430 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TCCCCTCACTCACTTTGAAGCAG
3' ss Score
7.46
Exon sequences
Seq C1 exon
AAATGATCCAGCCTGTGTGCCTGCCCAACTCTGAAGAGAACTTCCCCGATGGAAAAGTGTGCTGGACGTCAGGATGGGGGGCCACAGAGGATGGAG
Seq A exon
GTCAGTGGGCTGAAGCCAAGATTCGGAGTCCAGGGGCTCAGAACCCAGAGGGCTGCGGAGGGGGCTCCCCCAATGTCCCATTGTGATGTTCCCATGGGCTGCCCAGATACCCCGGCCAGGGAGTGCATGTCAGCTGCTCGGGACACAGTCAGCCAAGGAACTGTGGGTCAGGAGTCACGGTTCCATTGTTATGGGGACAACATGACCCTGCAGACCTTCTCAGGAGAGAGTTAGACCTTCTCGAACACAGCAGGTGTTTCCCTTTCCCTGCCCGGACCCCCGGCCTTGTTAACTGAGGACATACAGAGCCCACCTAGACAACCCTCCCAGGCTTCATTCAGAACTCAAAGATTCGTATTTGTGAAGACTCTTTGTCTTGTGGGACTTTGGAAGATGTGTTCTTTCATCCTACAAAGAGCAAGTGGAAGCAGCAGCAGATGAGATCGCTGTAATAATAAGGGAAGTAGGAGTGGCAGTAACCATAGTCCATGCAAATGAAGCCCGGGCCACCCTTTCCTTAGTGTGGGTACAGAGCTGGTCATGAGTCTTAGGTTTTTCCATCAATCACTTTCTTTGTTAGTAGGAAGAGGATTCATTTTCCGTGGCTGCCGTGACAAATTATCACAGTCTGCGTGGCTTAAAACGATGGAAATTGGCCAGGTGTGTTCCCTCACACCTGTAGTCCCAGCATTTTGGGAGGCCGAGTCTATGGGATCCCTTGAGGCCATTAGTTTGAGACCAGCCTGGGCAACATAGAGAGACACCGTCTCTACAAAAAATACAAAAATTAGCCAGGCATGGTGGCATGCACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGAGGATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATGGCAAGACCCTGTCTCTACAAAAAATTAAAAAAATTAGCCTGGGCCGGGTGCAGTGGTTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAAGTGGACCATTTGAGGTTCAGGAGTTTGAGACCAGCTTGGCCAATGTGGTGAGACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCGCACACCTGTAATCCCAGCTATTCAGGAGACTGAGGCTGTAGAATCACTTGAACCTAGGAGGCGGAGGTTGCAGTGAGCCGAGATCATGCCACTCCACTCCAGCTTGGGTGACAGAGCAAGGCTCCATCTCAAAACAAACAAACAAACAAACAAACAAACAAAAATTAGCCTGACATGGTGGTCCCAGCTACTCAGGAGGCTGGGGTGGGATTGCTTGAGCCCAGGAATTCTAAGCTGCAGTGAGCCGTGATCATGCCATCATACTCCATCCTGGGTGACAGAGTGAGACTTTGCGTTTAAAAAAACAAAACAAAACAAAAAAAAAGTGGAGATTTATTTCCACACGCAGTTGAGGTGTCTGTAGGGTGGTTTTCCTGGAGGCTCTGACCCCTTTCCTTTGGGTTCTGGTGGCGGCGGCTGCAGCTGCACTGGCATTCCTGGGCTTGTAGCTGGATCTCCAGCCTCAGCCTCCTTCCTCCCGTGGCTTTGCCCCCTGTGTCTCTGTATCTCAAACTTCCCTCTCCTGTGTCTTATAAGGACAGCAAGTCGTTGGATTTAGGGTCCACCCTAAACGCTGGGAGATCTTATGTTGAGATTCTTACCTTAATTACATCTGCAAAGACCCTGTTCCAAATAAGGTTGGGCTCCATAGTGGCAGGTAGGCATATTTTGGAGGGGCCCACAGTTCAACCTAACACAGGAATTTCAGTGTTTTCCACTCAACACCAATTACTTGAGCCCACCCCCAGCTGAAGGCACCCAGGAGCTAACCCGGATGCTTCGAGTCTGTGGGCCTACTTACCCCCCACCCACTGGCAGTGCTGCCCACCTGGCCGAGGGCACTCACAGCTCTCTGTAGTTTCCAACCCACCCACATGGCCCAGGCCCAGTTCTGTGCCAGTGTGGCTGGTCCAGGGCCTTTCTAGCTTCATCAGAACCAGCACCCCTGGTGTGTGGTGGGAGCTGGGACACCAATCTACGCTCCCCTTCCTCTCATGGTGGGCTCTCATTCCGGACCAACCAGCCCACCAGAGTCATTCTGATGACACTGGGCTCTGAAGAGGAGGCTGTGCAACAGCTTCATCCTCCCAGGAGATTCTCCATCCCGCTGCCGATTTTCTTCTCGCTGTCAATCTGCTCTGTCCAGTGCAAAAGGTCCGACGAGCCCCTGTCCTGATGTAGCTTCAGCTCCAGCCTGTCCTGGAATCTTCTCCCATAATGCATTGAGCTGTTTCGCCACGTTCCGGGCAGGAAGCTGAGTGTCTTGTGATACCATGTGCTCCTCAGAGCAGCCCCTCAGGGTCCTGTCATTGTGTGATTTTGTTGTCTCCATGGAATCTATGGAGTCTTTAAAACACCAAGATGCCTGGGTCACAAACCAGCTGAGTTGGAGGGGTCCATCCCTCGGTGTCGGGGGCGTGCTTGGCCCACTGCACGTGGATTAAGTCTCCTGTGACTGTTGCAACAAACGACCCCAAATTCGTGGCTTAAAATGACAGAAAGGTATCATCTCATAGTTAGGAAGGTCACAGGTCCAAACTCAGTCTCAGGGCGCTGGCGTCAAGTGTGGGCTGTGCTGGCTCCTCCTGGAGGCCCTTGGGGAATCTGTCTCCTGCCTTTCCCAGCGTCTGCACTCTGCCCACACTGCTTGGCTCGTGCCCCTCCTTGGTCTTCCGGGGCAGCAATGCCGCATCTTCGAATCTCTCTCTGACTCTCTGACTCTGGTCCCTGCTCTGTCGTCACAGCTTCTCCTCCGGCTCCTCCAAAGACCCCTGTGACTTCGTCAGGTCCACCCTCTTACTTGGGATCATCTCCCCACTCAAGGCCTGTCCCTCAATGCACCTGCAATGTCCCATTTGCCCTGTAAGGTGACACAGTCACAGGTTCTGGGGATTGGGGTGAGAATGTCTTTGGGGTCATTTTTCTGCTGACCATCCCAGAGTTCACAAAGACGCTGAGTGAGTGACCCTCCTGAGCCTCAGTTTCCCTCCCATAACCTGGGGTGTTCTGATGGCTGATTGGGCTGGTGCCCTGGGGAGGTGTCTTGGCCACTGTTGCCCCTACTCCTCCTCCTCTTTGGACACCTTAGGGGAGTCGGTGGCCCTGCCTTGAAGCAGACTGGCCCCTTGCGGCCACTCGTAGGAGGGCAAGCTCGGGCTTGAGGTGCTTCGAGACAGTGGGAGTCTGCTCGTCCCACCCGCAGGGCCCTGTCCTTTTCCGCTGTTGCGACACACCAGAGAGCATCCCCCTCGTCCCTCGTTCCCTCACCCCCCTGGTCTCAGCATGCGCCTTCTGTGTTTTGGGCCGGGCTTCCTTCTCACACACATCCCCTCACTCACTTTGAAG
Seq C2 exon
CAGGTGACGCCTCCCCTGTCCTGAACCACGCGGCCGTCCCTTTGATTTCCAACAAGATCTGCAACCACAGGGACGTGTACGGTGGCATCATCTCCCCCTCCATGCTCTGCGCGGGCTACCTGACGGGTGGCGTGGACAGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160183-TMPRSS3:NM_024022:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)