MmuINT0162726 @ mm9
Intron Retention
Gene
ENSMUSG00000024034 | Tmprss3
Description
transmembrane protease, serine 3 [Source:MGI Symbol;Acc:MGI:2155445]
Coordinates
chr17:31321514-31323543:-
Coord C1 exon
chr17:31323448-31323543
Coord A exon
chr17:31321657-31323447
Coord C2 exon
chr17:31321514-31321656
Length
1791 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CTTACATTACTCTGAGGCAGGTG
3' ss Score
1.67
Exon sequences
Seq C1 exon
AGACCATCCAGCCCATCTGTCTGCCCAACTCTGAAGAGAACTTTCCCGATGGGAAACTGTGCTGGACCTCAGGATGGGGAGCCACAGAGGATGGAG
Seq A exon
GTCAGTGGTCTGAAGCCTGAGACAGGGAGGGCCCCTCGGGATGCTTGGATGTCCCAGCTCAGGGTTGGGGCAGGCCAACTGTTCACAACAGCCATCTGCTGAATAGCCGTGGGTCACCATGGTGCCACTCCTCTTTGGACAGTGTGACGTTTTGAGGTTTCATGAAGAAATGAGCTATAGTGGAGAAGTGTGGGTACTTCTCCATGGTGAGGCCTCCACCCAACCCTCCTTCCTGCCCCTTCTTACTCTACTGAAGCAAGTGTCTGAAGCACACCTTGATGAGCCTCAAGCTTGTACCAAGCAGTACAAGATGACGAAGTCTTGTCTGAGAACTGGCATGGTGTGTTATTTTCTCCTATGAGCTTGCTATAGAAGGCATGACTCAGCTAATTCCACTGCTTTGGTAATGCTAATACTCTCAGTGATGGTCACGTCATGTACTTGCCAGGGACATCTTTGTCCCTTGCATCCAAGGCACAGTGCTGACACAGTCTCTCCAGCAATGGCTTTCCTTTGTGCATTTTCTAGGCACAGGCCAGCCTGCTGTCACTAGAAACTGTAGCCAAACTACTGAGGCCTGGATGGCTCAAAAAGCTCAAAAGGGCAGACTTGAGTCCTCTATCTTTCTGAAGTCTGAGGTCAAGATGTCTGTCCCAGCATCTCTCCAGTGTCTGGTGGCTCTAGCTATCCTTAGTGTTCCTTGGCTGGCTAATGTGTCAACCCAGATCCAATGTCTATGTGGTTGTTTGATTTTTGATTTTTTTCTGTTTATTTGTTTTGTTTTTTTTTCCCTAATGTGAGCTCTGGGTATCCAACCTACCACATTCCAGGTTGATCCATCATCTTAGTCCCTTGACCCCTGGCCCCATGGCATCAGTTGTCAGATCTAGAGCCTGCCCTAAATGCAAGGTAACTCAGCCTCCACATGGTACGTGATCCATACTTTAGCAGCTTCTGCTCCAAGCAAGATCACATGTCTTGGTTGCAGGCAGGCAAATAAGAAGGAGGTTATAGTCAACCCATGAGAGAAGCTCAGGGTTCGCCTTTGGAGACGTGTTCATGCAGGCTCTCACTGCAGCCCAGGCTGACCGCATGAACCTCACCACAAGCCTCCTGCCTCAGCCTCTCAAACTCCAGGATTCAATGCCCACTTTGTTTGTTACCTTCCAGCCTCAGGGGTCACTTGTGCTGTAGGCTGGCTCCTCAGTTGTCTCTGGGGACGGTGACAGCTGTTGTCCCTTTACCTTTGCTCCCACACTCCTGGGTTCACGGCCTCATCCTTGACTTCAAGGCTGACAGGCTGATCTGACTCTGGAGTTGCTCTGATGTCACCTTCTTCAAGTTGTTGATAGGTCCTTGTAATTTTCATGAGTTTACCAGCATCATCTGGGCTAGCTCACAACCATACCCTTGAATACCTTCAAGGTTCCCTAGTCAATGGCAAAGCCACAGGTTCAGGGCCCACACCTGTATTTGGAGGGACACGTTACTGTTGACTGAATTCAGCTCTGTCCAGAGGTGGGCGGCCTTCAGGGCCTCAGTTTCCCTTTTGCAATGTGGACTGACTGGCATGGGTCGAGGCTTGGTTGGCTGTGAGACAGCACACTGAGCAGGGGACACTCTGGGTGCCACGGGCTCCGTGACAGTCTGCTGTCCCAGTTACAGTAGACCTGGTCTTTGCTGTGACTGCTTCCTGTCAGGTGGAAAGTCCCATGTCCCCTGGTTCTCTTGACTCTGTTCTCTAAGCCGAACTCTGTCTCACTATGAATTTCTTACATTACTCTGAGGCAG
Seq C2 exon
GTGACGCCTCCCCTGTCCTGAACCACGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGACGTGTATGGTGGTATCATCTCTCCCTCCATGCTCTGTGCAGGCTACCTGAAGGGCGGTGTGGACAGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024034-Tmprss3:NM_080727:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATCCAGCCCATCTGTCT
R:
CTGGCAGCTGTCCACACC
Band lengths:
238-2029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: