BtaINT0150447 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021518 | TMPRSS4
Description
Bos taurus transmembrane protease, serine 4 (TMPRSS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101973]
Coordinates
chr15:29222300-29223731:+
Coord C1 exon
chr15:29222300-29222404
Coord A exon
chr15:29222405-29223690
Coord C2 exon
chr15:29223691-29223731
Length
1286 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TGCCTGTGTCTCCTTTCCAGCCC
3' ss Score
10.43
Exon sequences
Seq C1 exon
CAGCAAACCCACCTTCAGAGCTGTGGACGCTGGCCCAGCCCAAGATCTGGACATCGTCAAAGTCACAGAGAACCTGCAGGAGCTTCAGGTGCAAAACTCAAGTGG
Seq A exon
GTAAGTGAGAGGACGCCTCTGGCCCAGAAAGCTCAGCCACGCTCGCTGTCGTTGGGATTGCAGCCAGACTGCCCTGAACGGATGCAGCAAGGGGAACATAAGCCAGACAACAAGAACTCCTGGCCAGGCAGACAGTCCGATATCAAAAGCTAGAGCATCACATTTCTGAGCGGTTTTCTGTGTTGACTCTTTGGCTTAATACAAGGGGCAGCTGGACAAAGTGTGCTGTCCACATGCTGGCGGCCTTTCATCAGTCAAAGAAGAAAACCAAATTGGTTTCCTATGGCCTTATGCTCTCTTTGAGCCCCAGAGGCAGGATTCCAAAGGCCACTTTGTCCTTCCTGCCACTCACCCAGGCCAGAGTAGTACCCCCCTCTGCATTTCTAACTCTCCAGGGGAGCAGCTGTATGGCCGCTGTCCTGTTCTCATGCCCACCACCCGTGCCAGAGCCCGGCATCTACAGGAACACTGTCACCCCACAGAGAGAATGATGTCTCCTTAGGACGCAGGGAGGTTGCTGAGAGCTGCTTATTCATCAAAGAGTAAATCTTGAAAAGGAGAGGACTAGGAGCAGAATGATTGTTTGCCTGGAGTTTCACTAAAATCCCATTCCTCTTCTGTTTGAAGAACCTGCAGTGCCGCAGACACTGGTCCAGCCTCTGCTCTCTTCCATCTCAGGCTGCCAAGAGCCCCAGGGTGGGCTGTGACTCAGGCAGGGCCCAGCACATAGCAGATGCTTATCAGTAGGGGTGTGGAATCCAACTGCATTCAGTCGCACTGAATTGGGTGGAAGTACGGTGTCTGTATGGGGCTTCCCTGGTGGCTCAACTGGTAAAGAATCCACCTGCAAGGCAGGAGACCCTGGTGAGTTTCCTGGGTTGGGAAAATCCCATGGAGAAAGGATAGGCTACCCACTCCAGTATTCTTGGGCTTCTCTGGTGGCTCAGACAGTAAAGAATCCACCTGCAATGCAGGAGACTTGTGTTCGATCCCTAGGTTGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACCTCAGTGTTCTTGCCTGGAGAATCTGATGGACAGAGGAGGCTGGAAGGCTATAGACCATGGGGTCAGAGTCAGACACGATTGAACAGCTAAGTACAGCACAGCACGGTGTCTGTACAGCCCCCACCCAGCAAGGCTTCATATTTCCCGGGTGCTGGGAGGGGACTGGAGTCAATAGTGCCAGGAGACCCGAGTCCCTGCCCCCCAGCCAAAAGACAAGCAAAAGCCACAGGATGCCTGTGTCTCCTTTCCAG
Seq C2 exon
CCCCTGTCTCTCAGGTTCCCTGGTTTCCCTGCAGTGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021518:ENSBTAT00000055576:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(37.2=100)
A:
NA
C2:
PF154941=SRCR_2=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development