MmuINT0162735 @ mm9
Intron Retention
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:44987486-44988834:-
Coord C1 exon
chr9:44988733-44988834
Coord A exon
chr9:44987527-44988732
Coord C2 exon
chr9:44987486-44987526
Length
1206 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCCCCGTCTTTCTCTTTCAGATC
3' ss Score
13.99
Exon sequences
Seq C1 exon
CCAGCCCGCTTTCAGAGCAGTGGAGATCCGTCCAGATCAGAACCTCCCTGTTGCTCAAGTCACAGGAAACAGCCAGGAACTTCAGGTGCAGAATGGAAGCAG
Seq A exon
GTAAGCAAGAGGGGACATTCTGACCTGCAGAGGCTAACTAACACTGGGAAGTGGCTCAAGGTTGCAGCAGGGGAACACGAGCCAGACAACGGGAAGAACTAGCCAAGCAGCTCATTAAATGTCCAGGGTTTTGGGATTCCACGTTCAGGCTCAGGGGTATTTTCTGTCTGCCTTTTTCTTTAATACAGCATGCATTGTCCTGCTCAAAGGCAGAGCAATGAACAGTGACCTTCTCTCTCCCTGAACTGTCAAGATTCATGCCTTCCACAGCTCCTTCATGTTCCCTAGTGAGTTACCTGGTAGGCAAGAGCCTAAAAGTAGCTTTGTACTTTTCCATCACTTCCCCAGGCCAAAGCACCACCTTCTAACGCTCCACAGAAGGCTCTCCAGCCCTCACCTCACCACCCCACATTAGAGCACAGCTGATTCAAAACAACATTTGCTACAAAGCAGCCAAGGCTCCAGGAGAAGGCTGGCGTCTTAGCATTCAGGACGCTGGACAGAGCCTTAACACAGTAACTCAATAACTCTTTATTTTATTTTATTTTATTTTTATTTTTGTATCAAAAATTGTTTAAATTTTTTATTGGATATTTTCTTTATTTACAATACAAATATTATGTCCTTTCCCGGTTTCCCTCCCTACCAGAAACACCCTATCACATTCTCCCTCCCCCTGCTTCTATAAGGGTGTTCCTCCACCCACCCACCCACTCCCACCTCCCCTCCCTCGATTCCCCTACACTGGGAGCCTTCATAGGACCAAGGACCTCTCCTCCCACTGATGCATGACAAGGCTGTCCTCTGCTACATATGCAGCTGGAGCCAACACAGTAACTCTTGAAAAGGACCAGGTTAGAGGTAGAATCTGCAGGATTCCATCAAAATCCTGGTCTGTTTGGGAGGCCACAGTGCAGCAGGTTCTGCTCCCCACCACCACCACCTGCTGCCCAGGGTTCCAGGAGCCCAGACTGGCTTTGCATTGGGCAGGACTCCGTATATTGTAGGTACACGCACAGCAACAGCAGTGTTGCACTAAATCAAACCACACTGAGTATAATGCAGATCTACACACACCCATGGTAAAGTTTCTGGGGTTCTGCAGTGTTGGGGGATGGGGTTGAATCAGCAGTTCACAAAGGCTGAGTTCTAACCTCCCAGCCAAGGCGAAAGCAGAAGCCACAGGGCCCCGTCTTTCTCTTTCAG
Seq C2 exon
ATCCTGCCTCTCAGGCTCCCTGGTTTCCTTGCGCTGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091-Tmprss4:NM_145403:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(36.6=100)
A:
NA
C2:
PF154941=SRCR_2=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: