RnoINT0153404 @ rn6
Intron Retention
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49476474-49478108:-
Coord C1 exon
chr8:49478007-49478108
Coord A exon
chr8:49476515-49478006
Coord C2 exon
chr8:49476474-49476514
Length
1492 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCCCTATGTGTCTCTTTCAGATC
3' ss Score
13.06
Exon sequences
Seq C1 exon
CCAACCCGCTTTTGGACCAGTGGAGATGGGCCCAAACCAGACTCTCCTCGTCACCCCAGTCACAGGAAACAGCCAGGAACTTCAGATGCAGAATGGAAGCAG
Seq A exon
GTGAGTGAGAGGACACATTCTGACCCTCAGAGGCTATCTAACACTGGAGAGCAGCTCAGGGTTGCAGCAAGGGGAACACGAGCCAGACAACAGGAAGAACTAACCGAGCAGCTCATTAAATGTCCACGGTTATGGAATCCCATTTTCAGGCTCAGGGGGTATTCTCTGCTGGCCTTTTTCTTTACCACAACATGCACTGTCCTGCTCAAAGGCAGAGCAGTGAACAGCGACCTTCTCTCTCTCTGAACAGTCAAGATTAACACCTCCCATAAGCTACTTCATGCTTACTAGTGAGTTGCCTGGTAGGCAAGAGCCTGAAAGAAGCTTTGTACTTCTCATCACTTCCCCAGGCCAAAGCACTACCTTCTAATGCTCCAAAGAAGGCTCTCAGCCTTCACCTCACCACCCCACATTAGAGCACAGCTGACTCAAAACAAAATCTGCTACAAGGCAGCCAAGGCTCCAGGAGCAGGCTGGCTTCTTAGCATTCAGGACGCTGGACAGAGTCTTAACACAGAAACTCTGGAAAAGGACAGGTTTAGTGGAGAATGACTATCTGCAGGATCCCATACAAATCCTGTTCTGTTTGGAAGGGCCACCGTGCAGCAGCTTCTGCTCCCTCCCTGCCCGGGGTGCCAGAAGCCCAGACTAGCTTTGCACTGGACAAGGCTCTATATGTTGTAGGAGCATGCACAGCCACAGGAGTGGTGCATCAAATCGAACCACACTGAGTATTAATGCAGTTCTACCCACATTCCCAGTTTCTTGCAGTATTAAGGGTGGGGTTGAAACAATGCCAACCAACCAGAGCTTCCAGGGACTAAGCCACTACCCAAAGACTATACATGGACTGACCCTGGGCTCCAACCTCATAGGTAGCAATGAATAGCCTAGTAAGAGCACCAGTGGAAGGGGAAGCCCTTGGTCCTGCCAAGACTGAACCCCCAGTGAACGTGATTGTTGAGGGGATGGTGGTAATGGGGGGGGAGGATGGGGAGGGGAACACCAATATAGAAGGGGAGGGGGAGGGGCTAGGGGGATGTTGGCCCGGAAACTGGGAAAGGGAATAACAATCGAAATGTAAATAAAAAATACTCAAGTTAATAAAGATTAAAAATGCACCCCCATAGGCTCATATATAAAAAACAAAAAGGGTGGGGTTGAATCGGCGTTTCACAAAGGCTGAGTTCCAACCTCCCAGCCAAGGAGGTTGGGGAAGGGTGGTAATGGGGGAGGATGGGGAGGGGAACACCCATATAGAAGGGGAGGGGTAGGGGCTAGGGGGATGTTGGCCTGGAAACTGGGAAAGGGAATAACAATCGAAATGTAAATAAAAAATACTCAAGTTAATAAAGATTAAAAATGCACCCCCATAGGCTCATATATAAAAAACAAAAAGGGTGGGGTTGAATCGGCGTTTCACAAAGGCTGAGTTCCAACCTCCCAGCCAAGGAGAAAGCAGAAGCCACAGGGCCCTATGTGTCTCTTTCAG
Seq C2 exon
ATCCTGCCTCTCAGGCTCCCTGGTTTCCCTGCGCTGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650:ENSRNOT00000040313:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(36.6=100)
A:
NA
C2:
PF154941=SRCR_2=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]