BtaINT0150450 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24587987-24588568:-
Coord C1 exon
chr15:24588454-24588568
Coord A exon
chr15:24588086-24588453
Coord C2 exon
chr15:24587987-24588085
Length
368 bp
Sequences
Splice sites
5' ss Seq
CCAGTAGGC
5' ss Score
2.23
3' ss Seq
CTCCTCTGCCCTCCCCACAGTGT
3' ss Score
10.89
Exon sequences
Seq C1 exon
CAGAGCCCGATGCTGGATGGCCAAGCTCCCACAGAGGCTCAGGATGCAGAGGAGGGGCCGGGATCCGCAGAGCCAGGAGACCTGCTACGGAGGCCTGAGACCCAGCAGCAACCCA
Seq A exon
GTAGGCCAGACTGGGCCACGGGGGAATGACAGGGTGGGGCAGTGAAGGAACGATCTTCCCACACCCCCCAGCTTCCTTCTCCCCAGATCTTCCTCGGTCAGCCTTAAGTGTCTGACGGCCAGAGACTTTCTCACTATCCGTCCTGGACCTGCTTTCTCTCTGTTTCCCTATGGGGGTTTGAGTGGGCTCTGAGGCTCCAGTGATTGGAGCTCTGCCCCTCACCCATCCCGTGATAATGGGGCAGGGGCAGGTGGGCAGGTGCAGTGGGGCAAACTCCTGCCACCGCTTGGTGGCTGTCTCGACCTCGGGGTGCAGTGGGCTGGTGGGCAGGGGCAGGGCCCTCAGACACTCCTCTGCCCTCCCCACAG
Seq C2 exon
TGTCTGGGGCAGGGCGCTGGTGTGCCGGGCGGCGCTGCTGGGCGGTACTGGGAGCCCTGGGGCTGCTGGCTGGTGTGGGCGTTGGCTCCTGGCTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650:ENSBTAT00000023479:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTGGATGGCCAAGCTC
R:
CTAGAAGCCAGGAGCCAACG
Band lengths:
206-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development