HsaINT0169738 @ hg38
Intron Retention
Gene
ENSG00000166682 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr11:113699595-113700168:-
Coord C1 exon
chr11:113700066-113700168
Coord A exon
chr11:113699694-113700065
Coord C2 exon
chr11:113699595-113699693
Length
372 bp
Sequences
Splice sites
5' ss Seq
CCAGTAGGC
5' ss Score
2.23
3' ss Seq
CCCTCTGCCCTTTCCCACAGTTT
3' ss Score
12.3
Exon sequences
Seq C1 exon
AGCCTGATGCTGGATGACCAACCCCCTATGGAGGCCCAGTATGCAGAGGAGGGCCCAGGACCTGGGATCTTCAGAGCAGAGCCTGGAGACCAGCAGCATCCCA
Seq A exon
GTAGGCCAGACTGGGCCATAGGGGAATGACAGGGTGGGGACAGTGGAGGGCAATCATCCTACATTCCCCGGATCCTCCTTGGGGTCAGCCCCACATGATTGATGGTGAGAGGCTGTCTCACTCTTTATCCCCAGACCTGCTTCTGCTCCCCATTTCCCACTTTAGGGATTGAGTGGGATTTGTGGGCTTCAGTGATCAGGCCCTCTCCATCCTCCCCTGCCCCCACTCCCTCCCTAATCTGGGCTGATGGGGCAGGAGGAGGTGTCCTGTTGGAGCTCTGTGGGTGCCTAGCCCCATAGTGGTGACTTAGGGTGAAGTAAGGCAGGCTGGCAGGAGCAGGGGACCCAGATACCCCTCTGCCCTTTCCCACAG
Seq C2 exon
TTTCTCAGGCAGTGTGCTGGCGTTCCATGCGACGTGGCTGTGCAGTGCTGGGAGCCCTGGGGCTGCTGGCCGGTGCAGGTGTTGGCTCATGGCTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166682:ENST00000299882:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCTGGATGACCAACCC
R:
CTAGGAGCCATGAGCCAACAC
Band lengths:
199-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains