MmuINT0162743 @ mm10
Intron Retention
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:49106114-49106599:+
Coord C1 exon
chr9:49106114-49106216
Coord A exon
chr9:49106217-49106500
Coord C2 exon
chr9:49106501-49106599
Length
284 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GCTCTCTTCTTCCCTCATAGTTT
3' ss Score
8.82
Exon sequences
Seq C1 exon
AGTCCAACACTGGATGACCAAAGCCCAATGGAGATTCGGTGCACGGAAGAGGGTGCTGGGCCTGGGATCTTCAGAATGGAGTTGGGAGACCAGAGGCAATCCA
Seq A exon
GTAAGTCACACTGGCTGGCTACTAGGGAGGGACAGGATGGGATCGGCAAAGGATGCTCTTCCTCCATCCCTTATGCTCTTCTTGGATCAGTGTGAGGATGAGGGGCATCTCATTTTTTTATCCCTCACTTGCTGTTTCCCACTTTAAGACCGAGTGGGGTCTGGGTTTCAGAGACCATAGCCAGGCTCTATCCCTTGGGGGCAGGCTCCTGTTAGAACCTCAAGGTTGAGTAAAGCTTGCTGGCAGGAGGAGACAACCCAGACAGCTCTCTTCTTCCCTCATAG
Seq C2 exon
TTTCTCAGTCCCAACGCTGGTGCTGCCTGCAACGTGGCTGTGTTATACTGGGCGTCCTGGGGCTTCTGGCTGGAGCAGGCATTGCTTCATGGCTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268:ENSMUST00000165088:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACACTGGATGACCAAAGC
R:
AGAGCCATGAAGCAATGCCTG
Band lengths:
196-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types