RnoINT0153412 @ rn6
Intron Retention
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53417275-53417760:+
Coord C1 exon
chr8:53417275-53417377
Coord A exon
chr8:53417378-53417661
Coord C2 exon
chr8:53417662-53417760
Length
284 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GCTCTCTGCTTCCTTCATAGTCT
3' ss Score
8.18
Exon sequences
Seq C1 exon
AGTTCAACATTGGATGACCAATGCCCAATGGAGATCCGGTGCACAGAAGAGGGTCCTGGGCCTGGGATCTTCAGAGCAGAGTTGGGAGACCAGCAGCAACCCA
Seq A exon
GTAAGTCACACTGGGCTACAAGGGAGGGACAGGATGGGATCAGCAAAGAATGCTTTTCCTCCATCCCTTATACCGTTCTTGGGTCAGTATGAGGATGTGGGACATCTCATTCTTTATCCCCCACTTGCTGTTTCCTGCTTCAGGACTGAGTGGGATCTGGTTGGTCTTCAGAGACCAGAACCAGGTTCTGTCCCTTGGGGGCAGGCTCCTGTTTGAACTTCAAGGTTGAGTAAAGCTTGCTGGCAGGAGGAGACAACCCAGACAGCTCTCTGCTTCCTTCATAG
Seq C2 exon
TCTCTCAGTCCCAGCGTTGGTGCTGCCTGCAACGTGGCTGTGTAATACTGGGAGCCCTGGGGCTGCTGGCTGGAGCAGGTGTTGGTTCCTGGCTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058:ENSRNOT00000011107:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGACCAATGCCCAATGG
R:
AAGAGCCAGGAACCAACACCT
Band lengths:
190-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]