RnoEX0092133 @ rn6
Exon Skipping
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53417275-53420548:+
Coord C1 exon
chr8:53417275-53417377
Coord A exon
chr8:53417662-53417760
Coord C2 exon
chr8:53420413-53420548
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTGCTTCCTTCATAGTCT
3' ss Score
8.18
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
AGTTCAACATTGGATGACCAATGCCCAATGGAGATCCGGTGCACAGAAGAGGGTCCTGGGCCTGGGATCTTCAGAGCAGAGTTGGGAGACCAGCAGCAACCCA
Seq A exon
TCTCTCAGTCCCAGCGTTGGTGCTGCCTGCAACGTGGCTGTGTAATACTGGGAGCCCTGGGGCTGCTGGCTGGAGCAGGTGTTGGTTCCTGGCTCTTAG
Seq C2 exon
TATCTTTCAGAATAAATGGTGAGGATCTTCTGCTTGAAGTGCAAGTAAGGGCTCGGCCAGACTGGCTCCTGGTCTGCCATGAGGGCTGGAACCCTGCCCTGGGGATGCACATCTGCCAGAGTCTTGGATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058_MULTIEX1-2/3=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF154941=SRCR_2=PU(39.8=84.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGGATCTTCAGAGCAGA
R:
TCCAAGACTCTGGCAGATGTG
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]