MmuEX0048175 @ mm9
Exon Skipping
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:48914176-48915304:+
Coord C1 exon
chr9:48914176-48914321
Coord A exon
chr9:48914606-48914704
Coord C2 exon
chr9:48915182-48915304
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTTCTTCCCTCATAGTTT
3' ss Score
8.82
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
CCCTGGTGTGGGGCTGCTGGATCTTCAACCACTATTTCTCCAGAGTCCAACACTGGATGACCAAAGCCCAATGGAGATTCGGTGCACGGAAGAGGGTGCTGGGCCTGGGATCTTCAGAATGGAGTTGGGAGACCAGAGGCAATCCA
Seq A exon
TTTCTCAGTCCCAACGCTGGTGCTGCCTGCAACGTGGCTGTGTTATACTGGGCGTCCTGGGGCTTCTGGCTGGAGCAGGCATTGCTTCATGGCTCTTAG
Seq C2 exon
TGTTGTATCTATGGCCAGCTGCCTCTCCATCCATCTCTGGGACGTTGCAGGAGGAGGAGATGACTTTGAACTGTCCAGGAGTGAGCCGTGAGGAAGAGCTCCTTCCATCTCTTCCCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGATCTTCAACCACT
R:
ACGTCCCAGAGATGGATGGAG
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: