BtaEX0037179 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24587368-24588568:-
Coord C1 exon
chr15:24588454-24588568
Coord A exon
chr15:24587987-24588085
Coord C2 exon
chr15:24587368-24587487
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTGCCCTCCCCACAGTGT
3' ss Score
10.89
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
CAGAGCCCGATGCTGGATGGCCAAGCTCCCACAGAGGCTCAGGATGCAGAGGAGGGGCCGGGATCCGCAGAGCCAGGAGACCTGCTACGGAGGCCTGAGACCCAGCAGCAACCCA
Seq A exon
TGTCTGGGGCAGGGCGCTGGTGTGCCGGGCGGCGCTGCTGGGCGGTACTGGGAGCCCTGGGGCTGCTGGCTGGTGTGGGCGTTGGCTCCTGGCTTCTAG
Seq C2 exon
TGCTGTATCTGTGGCCAGCTGCCTCTCAGCCCACTCCTGAAACCCTGCAGGATGAGATGACTTTGAACTGCTCCGAGGCCAGCAGTGAGGAAGCCCTGCTCCCCTCGATTCCCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=0.088 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCACAGAGGCTCAGGATG
R:
GCCTCGGAGCAGTTCAAAGTC
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development