DreEX6075822 @ danRer10
Exon Skipping
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18237215-18238933:-
Coord C1 exon
chr15:18238789-18238933
Coord A exon
chr15:18237430-18237528
Coord C2 exon
chr15:18237215-18237328
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCTTCAAATAGTGT
3' ss Score
8.65
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGTCTCAGTAGAGATGCGGTGGCAGTGATTGAGAACCCTGTAGTGGTCAGACAGTCTTTTCATCCAGAGAGTCTGCAGGTGGACATGCTCGAGTCAGACCAGAATAACCACAGGTGCCTCAGAGAGCTGCAGTTTCTCCATCCTG
Seq A exon
TGTCTGGCAAAGTGTCATCTCGTAAACTAGTGAGAGTGTTTGCAGCTCTGTGTGTGCTGTGTCTGCTGGGAGGTGTTGTGGTTGGAGTTTGGTTCATAG
Seq C2 exon
TGAAATTTCTCTTAAAGCCAAACTTATCTCAGAGCCCTGCGAGCCTGGGAGACACTAAGGACACGTCCTTCTGCAATGTGACCGAGGACATCTCTGTGACAGATCCCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717-'1-2,'1-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGAGAGTCTGCAGGTGG
R:
GGTCACATTGCAGAAGGACGT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]