RnoINT0153414 @ rn6
Intron Retention
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53418382-53420548:+
Coord C1 exon
chr8:53418382-53418504
Coord A exon
chr8:53418505-53420412
Coord C2 exon
chr8:53420413-53420548
Length
1908 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TTTTCACATGGGGCTTTTAGTAT
3' ss Score
3.26
Exon sequences
Seq C1 exon
TGTTGTATCTCTGGCCGGCTGCCTCTCCACCCGTCTCGGTGACGTTGCAGGAGGAGGAGGTAACGCTGAGCTGCCCAGGAGTGAGCAGTGAGGAAAAACTCCTTCCATCTCTTCCCAAAGCAG
Seq A exon
GTGGGCAATGTCCTCAAAGCTACAGGAACCAGATTTGCTCCTAGCTCGGGGCCCTTTACACTTCAGGACGGAAATGAAGGACCAGCAGTTTGCCATCACCCTCTGTCCCTTCCTCTACTGGATGGGAGTTGTAACAAGGTCTACCTGGCAGCACTGAGGTCGGGTTTAGGGCTTACGGTCTTCCCTAAGGAGTGTCCCGATCTTTAGCTGGGGTGTGGTTAGGAGGCCAGGGCAGTAGAGAAATGAAGCTTATGTGGGGGAAGAGGAGCTAGCGGTAGGGGTGACAGTGTGTGAACAGCAGGGCCACCAGGTCATCTGAGGACATCACTCCACATTGTCCCCTGGCTGTCTCCACTGTCCGTTCTTCCAGGAAGAGTTGGAGTTCACACAGTACAATGCTGTCCAAAGGTCGGATGTTAGAAAGAGTTATAGAAGTTAGATCAAGCCTGGGGTTTTCTTATTTATGTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGCTAGATGGGTACATTATTTCCTTGAGCTTCCAATTCTTTCTATGCACAGTGAAAAAGAAAAGTATTTACTGCGTGCAATTGTAATAACAAAGCATGGAAATACATAAAAGAAGCGTAGTTGTGAGCCCGTGTATCCGCCATCTGGCCTGCCATAACAAAGCACTACAGATGGGGTGTGCGTTTATTTTCTCACAGACTGGATGCTAGACGTCCAGTTACAAAGAGCAGCTTGGTTCCTGGTGAGGGCTCTCTTCTTGGCTCCCTACAGTATCATCCTACAGTATTTTCTGTTTGCTGGGAGGTGGGTAGGGAAATAATGAATGAGTTGGTGTCTTCTATGAGGACACTGGCCCCCCTGGACCAGCACCCCAGGATCTCATTTCATCTTTAAGTGCCTAATGTATCCAAGCTGGCCTCTAGCTCCTGCCTCCACCTCTGGAGTGTAGGGGTTACAGGCTTGTTCTACCACAGCCAGCACTGGGAGTCAAACCCAGGGCTTTGTGCATGCTAGGAAAGGACTCTGTCAATGAAGCTGTAGAACAAGGCCTTTTGTTTAATCTTAAATGCCTTCTTCAAAGCTCTGTCTCTAAACACAGTTAAACTGATGGAGGGCTGGAGGAAGAGAGGGAGGGAGGAAAGGAGAGAGATAGAGATAGAAATAGAGAGAGTGAGAAAGAGAGAGAGGGTGGAGAGAGAGACAGAAAGAGAGAGAGAGAGAGGGGAGGAGGAGAGAGAGACAGACACACACACACAGAGAAAGAGAGAGAGACAGAGACACAGAGATACAGAGACACACAGAGAGAGACACAGAGAGAATATGCAACAACACAGGGGAGAAAGCAGTTTATAAACATTGACTACTACTGTCACAATATTTGAATTCAGGAGACTTGGCTTATGTTCTAGATCTATCCCTTGTTGGTCTTGGACAAGTTGCTTTCACCTTTGTGCCTCGATATCCCCTCTGTTGAGGGAGTTAACTGCTTTCTTGTAGGGTTGTTATGGTTAAGAGTGTGGTAGAATACCCCTGTTTATTACTCTCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGTCTGCCACTGACTGAGTGTGGGGGTCAGAAGACAATTTGTTGGTTCTCTATCACATAGGCTGTGGGGGTTCAGCCCAGGTTGACAAGCTTGATGATGAGTGCTTTTATCTGCTGAGTCATCTCCCTTGCCTCAGAGCACCTTTTAAAGCACATGGTCAAAACACGGAACTGAAATATCTACAAAATGGTAGCTTTTGTTTTCAGCACTGACCAGGCACCCAGGGGGGCAGGCAAGCTGACCTGGGGTGGTCCAAGCGTCCAGCTCCTCTTGGTTGGGCAGCAGGAGGGTTTTCACATGGGGCTTTTAG
Seq C2 exon
TATCTTTCAGAATAAATGGTGAGGATCTTCTGCTTGAAGTGCAAGTAAGGGCTCGGCCAGACTGGCTCCTGGTCTGCCATGAGGGCTGGAACCCTGCCCTGGGGATGCACATCTGCCAGAGTCTTGGATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058:ENSRNOT00000011107:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154941=SRCR_2=PU(39.8=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTATCTCTGGCCGGCT
R:
ATATCCAAGACTCTGGCAGATGTG
Band lengths:
254-2162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]