RnoINT0153413 @ rn6
Intron Retention
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53417662-53418504:+
Coord C1 exon
chr8:53417662-53417760
Coord A exon
chr8:53417761-53418381
Coord C2 exon
chr8:53418382-53418504
Length
621 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
CTTTCTCTGCACTTTGTTAGTGT
3' ss Score
5.13
Exon sequences
Seq C1 exon
TCTCTCAGTCCCAGCGTTGGTGCTGCCTGCAACGTGGCTGTGTAATACTGGGAGCCCTGGGGCTGCTGGCTGGAGCAGGTGTTGGTTCCTGGCTCTTAG
Seq A exon
GTCAGTACTGGGCCCTTCTGTCTGAAGAGGGGAGGAGGACAGGATCTGAGGGAAGCTTGGAGATGGAAGCAGGTGCTGAACAGCCACTGTATGTAGATGGACAAGCCCCTCTGTCATCTGTGCTGTATGGACAGCCAGACAGGGAAGGGGTTACCCATGGAATGGAAGGATTTAAGGGTCATAGAGGGAACACCTTGACCCTACAGTCCTCTTACTTGTATGGATGGTCCATGGCTTTAGTCAGATTCTCCCTCCTCCCCCACCTAGACACTGTTCTTAGTGAGAGACAAACAGACAAATAGAAACACAGGATAGTCTGACAGACAGTCCTGTGCCTCTCTTACTGATTGATTGGGGTCTATCTATAGTCAGTGTGGCTGACAGAGATTCTTTTTTTTTTTTTTTCTTTTCTTTTCTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGAGCTTGCTAGGCAAGCGCTCTACCACTGAGCCAAATCCCCACCCCACAGAGATTCTTTAGAAGGCAGGCCTACCCCTACTGCTGTACTGACTTGTTAGGCACGTTGAGCCTTTCTGGGGGTTTCCTCCCGGTTCCCAGTCTCTCTGTGACTTTCTCTGCACTTTGTTAG
Seq C2 exon
TGTTGTATCTCTGGCCGGCTGCCTCTCCACCCGTCTCGGTGACGTTGCAGGAGGAGGAGGTAACGCTGAGCTGCCCAGGAGTGAGCAGTGAGGAAAAACTCCTTCCATCTCTTCCCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058:ENSRNOT00000011107:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCAGTCCCAGCGTTGG
R:
CTGCTTTGGGAAGAGATGGAAGG
Band lengths:
222-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]