BtaINT0150453 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24587368-24588085:-
Coord C1 exon
chr15:24587987-24588085
Coord A exon
chr15:24587491-24587986
Coord C2 exon
chr15:24587368-24587490
Length
496 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
TTCCTTGTCTTTGTCTTCTGAAG
3' ss Score
1.24
Exon sequences
Seq C1 exon
TGTCTGGGGCAGGGCGCTGGTGTGCCGGGCGGCGCTGCTGGGCGGTACTGGGAGCCCTGGGGCTGCTGGCTGGTGTGGGCGTTGGCTCCTGGCTTCTAG
Seq A exon
GTCAGTGCTGGGACCTTCAGTGGCTGGGGGAGGGACAAAGAATGGACTCTGGGGGTGCTGGGAGAGAGGAGTAGGAAGTGAGCGAGTGTCTAGGGCAGGTGGGATGACTGCCTTTTCCATCTACTCTGACAGCAAATGGAGACGGGATGCAGGTCAAGCTGGAGGGCCTCGGGCTCTATGTAGAGGAACGTTTTTGTCCTGTAGTGAGAAATGTGCTTGAGCAGGTGATCCAGGGAGGCCCTGGTCAAGCTGCACCTGGACATCTTTCCCAGTGCGAGAGAGAGAGACAGACAAACACAGACAAGACAGAGCGCGCGATGCCTCTCTGCGTATTGGGAGGGACCTGCCTAAAGCAGGGTGGTAACGAGGAGTCCCCGGAGGCTGCCTTGCCACCCTCTGCAGCAGATGTCTTGTTCTGCACCTGGGCTCCCTCCTGGGGGAATCCCTTCCTTTCCCAGCCTCTTCTCTGTGACCCTTTCCTTGTCTTTGTCTTCTG
Seq C2 exon
AAGTGCTGTATCTGTGGCCAGCTGCCTCTCAGCCCACTCCTGAAACCCTGCAGGATGAGATGACTTTGAACTGCTCCGAGGCCAGCAGTGAGGAAGCCCTGCTCCCCTCGATTCCCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650:ENSBTAT00000023479:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCGGTACTGGGAGC
R:
TGTTCTGGGAATCGAGGGGAG
Band lengths:
184-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development