GgaINT0138208 @ galGal3
Intron Retention
Gene
ENSGALG00000007340 | F1NC10_CHICK
Description
NA
Coordinates
chr24:5618942-5619279:-
Coord C1 exon
chr24:5619222-5619279
Coord A exon
chr24:5619015-5619221
Coord C2 exon
chr24:5618942-5619014
Length
207 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
CCGCGGGGCGCCTGGAGGAGGTT
3' ss Score
-13.03
Exon sequences
Seq C1 exon
CTGCTGCTTGGGGTCATGGGGCTGCTGGTGGCGGCACTGTCCGGGGCCTGGCTGCTGG
Seq A exon
GTCAGTGCCTGCACAACAGCCCCAGCTCCGTGCCCAGCACCCTGCCCAGCCACACTCCTCACCCACTGCTCTCCTCTCCCAAAGGGCAGCACCTCAGGGGTCCACAGCCGCACCAGGGCTTGGCCAAGCCACAGGCATCAGATATGGTGACAGCGTGCAGTGAGGGCGAGGAGGAGGAGCCTGTGGTCCGCGGGGCGCCTGGAGGAG
Seq C2 exon
GTTTCCCCCTTCCCATTGCCCCTGCTGAACCTGGGATGCTCCTGGATAGTGAATCTCTGCTGAACTCTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340:ENSGALT00000011874:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]