MmuINT0162744 @ mm9
Intron Retention
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:48914606-48915304:+
Coord C1 exon
chr9:48914606-48914704
Coord A exon
chr9:48914705-48915181
Coord C2 exon
chr9:48915182-48915304
Length
477 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
TTCTCTGCACTTTCTTCAAGTGT
3' ss Score
5.87
Exon sequences
Seq C1 exon
TTTCTCAGTCCCAACGCTGGTGCTGCCTGCAACGTGGCTGTGTTATACTGGGCGTCCTGGGGCTTCTGGCTGGAGCAGGCATTGCTTCATGGCTCTTAG
Seq A exon
GTCAGTGCTGGGCCCTTCTGTCTGAGGGGAAGACAGGATCTGGGGGGAGCCTGGAGACAGAAGAAGGTGCTGAAAAGGCACTATGTGTAGATGGATAAGCTTCTCTGTCATCTGTGCTGTGAAGACAGCCAGACAGAAAAGGGCTTACCCATGGAATGGAGGGATTTAAGGGTCATAGAGAGAACAGCTTAGCCTTACAGTCCTGTCACTGTGTGGATGATCCATGGTTTTGGTAGAAATTGTTTTTATTGAGAGACAGACAGACAAATAGAAACACAGGATAATCTAACAGACAGTCCTGTGCCCCTCTTACTGATTAATTGAGGTCTGTCTATAGGCAATGTGGCTGGTAGAGACTCTTTAGGAGGCAGGCCTACCCCTACTGCAGTACTGACTTCCTAGGCACGTTGAGCCTTTCTGGAGAATGTTCCTCCCCATTCCCAGTCTCTCTGTGACTTTCTCTGCACTTTCTTCAAG
Seq C2 exon
TGTTGTATCTATGGCCAGCTGCCTCTCCATCCATCTCTGGGACGTTGCAGGAGGAGGAGATGACTTTGAACTGTCCAGGAGTGAGCCGTGAGGAAGAGCTCCTTCCATCTCTTCCCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268-Tmprss5:NM_030709:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.104
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCAGTCCCAACGCTGGT
R:
CTGTTTTGGGAAGAGATGGAAGGA
Band lengths:
222-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: