HsaINT0169739 @ hg38
Intron Retention
Gene
ENSG00000166682 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr11:113698905-113699693:-
Coord C1 exon
chr11:113699595-113699693
Coord A exon
chr11:113699028-113699594
Coord C2 exon
chr11:113698905-113699027
Length
567 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
CTCTTTGTTCTTCTCTAAAGTGC
3' ss Score
7.1
Exon sequences
Seq C1 exon
TTTCTCAGGCAGTGTGCTGGCGTTCCATGCGACGTGGCTGTGCAGTGCTGGGAGCCCTGGGGCTGCTGGCCGGTGCAGGTGTTGGCTCATGGCTCCTAG
Seq A exon
GTCAGTGCTGGGGGCCTTTCTCTGGTGTGGGGGAGGTTGGAAGGGAGAAGCAGGTGCTGAGCAGGTGTTAAAGGTAAATGGGACAACTGTCTTCCTCAACTACTCTGTGCAGACAAGGGGAGAAAGGGTGAAATTGCAGCAGGAGGGATCTAGGCTCTACATAAAGAAGAACAAAGTGTATGATCCAAGGAGGCCGTAGTCAGACTTTTTCTGGAAATCTTTCCCAGTGAGAGAGACACAGAGAGAACACACACAGACAGAGACAGAGACATACTGAGAGACAGCTAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAAAGGAGAGTCAAAGAGGCAGAGATAGAGGCTGAGGCCGAGAGAGATGGAGCGCTATGCCCCTCCTCAGCAGGTTGGTTGGGGAGCTGCCTGAGAGCAAGGTGGCTGATGAGGAGGTCAGCACCTTGACACCTTCCTTTGGAAATCAGACCCTTTCTCTTTGTTCTTCTCTAAAG
Seq C2 exon
TGCTGTATCTGTGTCCTGCTGCCTCTCAGCCCATTTCCGGGACCTTGCAGGATGAGGAGATAACTTTGAGCTGCTCAGAGGCCAGCGCTGAGGAAGCTCTGCTCCCTGCACTTCCCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166682:ENST00000299882:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCAGGCAGTGTGCTGG
R:
CTGTTTTGGGAAGTGCAGGGA
Band lengths:
222-789
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains