DreINT0165403 @ danRer10
Intron Retention
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18237215-18237528:-
Coord C1 exon
chr15:18237430-18237528
Coord A exon
chr15:18237329-18237429
Coord C2 exon
chr15:18237215-18237328
Length
101 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CGTTTAATGTCTTTGTCTAGTGA
3' ss Score
6.41
Exon sequences
Seq C1 exon
TGTCTGGCAAAGTGTCATCTCGTAAACTAGTGAGAGTGTTTGCAGCTCTGTGTGTGCTGTGTCTGCTGGGAGGTGTTGTGGTTGGAGTTTGGTTCATAG
Seq A exon
GTAAGATTTGAAACAGTTCAAAAGCTTTGGTCAACTTTTGTGTATTTATAATGCAGAAAGTTCCTTTATTTCTGCTGTGAACGTTTAATGTCTTTGTCTAG
Seq C2 exon
TGAAATTTCTCTTAAAGCCAAACTTATCTCAGAGCCCTGCGAGCCTGGGAGACACTAAGGACACGTCCTTCTGCAATGTGACCGAGGACATCTCTGTGACAGATCCCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717:ENSDART00000156505:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGGCAAAGTGTCATCTCG
R:
TCTGTCACAGAGATGTCCTCGG
Band lengths:
202-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]