GgaINT0138208 @ galGal4
Intron Retention
Gene
ENSGALG00000007340 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr24:5496701-5497016:-
Coord C1 exon
chr24:5496908-5497016
Coord A exon
chr24:5496824-5496907
Coord C2 exon
chr24:5496701-5496823
Length
84 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
ACTGCTCTCCTCTCCCAAAGGGC
3' ss Score
9.24
Exon sequences
Seq C1 exon
TCTGCCAACGCATCACCCAAAACTGTCTGCACCACCTGGAGGCTGCTGCTGCTGCTGCTTGGGGTCATGGGGCTGCTGGTGGCGGCACTGTCCGGGGCCTGGCTGCTGG
Seq A exon
GTCAGTGCCTGCACAACAGCCCCAGCTCCGTGCCCAGCACCCTGCCCAGCCACACTCCTCACCCACTGCTCTCCTCTCCCAAAG
Seq C2 exon
GGCAGCACCTCAGGGGTCCACAGCCGCACCAGGGCTTGGCCAAGCCACAGGCATCAGATATGGTGACAGCGTGCAGTGAGGGCGAGGAGGAGGAGCCTGTGGTCCGCGGGGCGCCTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340:ENSGALT00000011874:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCAAAACTGTCTGCACC
R:
CACTGCACGCTGTCACCATAT
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]