BtaINT0150452 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24578867-24579447:-
Coord C1 exon
chr15:24579292-24579447
Coord A exon
chr15:24578876-24579291
Coord C2 exon
chr15:24578867-24578875
Length
416 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATCTAGCAGTCTGGTTTCAGCAA
3' ss Score
-0.97
Exon sequences
Seq C1 exon
GGGGACAGCGGGGGTCCCCTGGTGTGCCTGGACGAGGGCACGTGGCGCCTGGTGGGGGTGGTCAGCTGGGGACACGGCTGCGCAGAACCCAGCCACCCCGGAGTCTACGCCAAGGTTGCCGAGTTCCTGGACTGGATTCAGGACACGGCAGCGCAG
Seq A exon
GTGAGTGGGGGCAAGTGGAGAAGACCAGTTTGTGAAAGACCCAACCCTCGAAACCGTGATTCTCGCCCCTTAGGCCTGGGTCCTGCTGGGGGCGGGGGAAGGTTTCAGAGGAAGTGATGCTTGTGACAGCTGAATCCATTCTATCAGTTTAAGCATTCACTCGGGAAGAATCGACCCGAGTTTGTAGCCCAGATTCCTAAGCTTGGTAAACTTCAGTGTCCTGGTTATAACCATCCAGTCTGTCTTATATGCTGTGATACGTGAAGATTACATGAAGTAAGGCCTGCCCAGCTCTAGGCTTGGAGTGAGTGACCCAAGTGTTATGATGCATTTATCTATGTTCATTACTCTTCCCTGGTCCTGCCTGCCCTCCCTGTACTAGGGAGAGAGCCCAACATCTAGCAGTCTGGTTTCAG
Seq C2 exon
CAACTAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650:ENSBTAT00000023479:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.5=86.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development