GgaINT0138217 @ galGal4
Intron Retention
Gene
ENSGALG00000007340 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr24:5494022-5494272:-
Coord C1 exon
chr24:5494120-5494272
Coord A exon
chr24:5494034-5494119
Coord C2 exon
chr24:5494022-5494033
Length
86 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TGCATAGAGAAACCTCACAGCCA
3' ss Score
-5.74
Exon sequences
Seq C1 exon
GGTGACAGCGGGGGCCCCCTGGTCTGCCAGGATGAGCTGGCGTGGCGCTTGGTGGGCATCGTCAGCTGGGGCCGGGGCTGCGCCGAACCAAACCGCCCGGGGGTTTACACCAACGTGGCTCAGCTTCTGCCCTGGATTTATCACATCACCGAG
Seq A exon
GTATGGCTGCAGCCAACAGCAGCACAGCTTCGGCCTCAGTTGCAGCTGTGTGCGTTGCAGAGTGTGTGCATAGAGAAACCTCACAG
Seq C2 exon
CCAGCCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007340:ENSGALT00000011874:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.6=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]