DreINT0165401 @ danRer10
Intron Retention
Gene
ENSDARG00000087717 | tmprss5
Description
transmembrane protease, serine 5 [Source:ZFIN;Acc:ZDB-GENE-131121-184]
Coordinates
chr15:18228032-18228693:-
Coord C1 exon
chr15:18228541-18228693
Coord A exon
chr15:18228462-18228540
Coord C2 exon
chr15:18228032-18228461
Length
79 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTTGTATTTCCTGTTGTAGAGC
3' ss Score
9.32
Exon sequences
Seq C1 exon
GGGGACAGTGGTGGTCCTCTGGTTTGCCAGGATGAAAATGTCTGGAGGCTGGTTGGAGTTGTAAGCTGGGGAACAGGCTGTGCTGAGCCAAACCATCCAGGAGTTTATAGCAAAGTGGCTGAGTTTTTAGGGTGGATATATGACATTATAGAG
Seq A exon
GTGAGTATATGTGTTTCAAAAGAGATACGTAGCTCAAAACTGATATACAGTTATTTTCATTTTGTATTTCCTGTTGTAG
Seq C2 exon
AGCTACTAAAGGCTGACGTTTGAAAGTAGAAGAGAAGAACGTCCTGACCCTTTTTTTTAAATAATGTTGCCTTTTATATTATTTATTATATTTTATTACGCAAAGCCTCAGTATTTACAACAATGTAAAGATTGTTTGTTATTATTTGTTTGGTGTTGTGTTACTCAAGATAATTGTGGTTTTACAATAAATGTTTGACATTTACAAAAGGGGACAATGTGATCTGTTCTGTTCTCTTTTTGAATTGCTTAATCTTAAAAGCTTATGTTAGTTCAGGTGAAAATGGTAAAGTATTTATGTGTTTATCTGTGTAACAGTTGTTACAATATTTATATTTGACCATTTCTGGAAAGACTAATCAAGTGCATGGCATTAACACGAATCTATGATGTTTCACGATCGATTTAATCCTTCAACTACCCCACCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087717:ENSDART00000156505:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.3=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCTGGAGGCTGGTTGGA
R:
AGGGTCAGGACGTTCTTCTCT
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]