BtaINT0150497 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22465062-22466022:-
Coord C1 exon
chr7:22465751-22466022
Coord A exon
chr7:22465199-22465750
Coord C2 exon
chr7:22465062-22465198
Length
552 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
GGTGCTCCTTGTCTTGGCAGCCA
3' ss Score
6.64
Exon sequences
Seq C1 exon
CACGAAGGTGGAGCTGGTGCGGGCTCAGCTGGGCACTGCGTCCCTGTCGGGCGTTGGCGGGAGCCCCGTGAAGGTGGGGCTCAGGCGGGTGGTGCTGCACCCCCAGTACAACCCCAGCATCCTGGACTTCGACGTGGCCGTGCTGGAGCTGGCCAGGCCTTTGGTCTTCAACAAGTATGTGCAGCCCGTCTGCCTGCCACTGGCCATCCAGAAGTTCCCTGTGGGCCGCAAGTGTGTGATCTCCGGGTGGGGCAACACGCAGGAGGGCAACG
Seq A exon
GTGAGCTCCCCATGCCCCCTGGCCTGGGGCTCTGATCCCCCTGCTTGCAGACCACTCACCTTTCCACTACCTCAGGGTTTCAAACTCCGGCCTAAGGCAGCTGCTTTTTATTTTATAGTTTTATTGGCACATAGCCACACCCACTCACTCATAGATGGCCCCCTGGGGCAGCAAAAGCAGAGCTGAGTGGTCTCCATGGAGACTGGCCCATAAAGTGGACTGTATCTACTATGTGGCTCTTTGTGGAAAAAAGTTGGAGGACCCTTGTTATACCACGCATAGCCCCCCACCAAGAGTTAGTGCCTTCTTTGAAGTCTGAGTAGCCCCCTGCAGGGCACCCACGGTGCTAGGGAACCCACTTGTGGGCCATGGTGAGGCTCTTGGGCTCTGGGGTCTACCTCTGTCTTGCTATGTGACTTAACACACATCCCTGCGAGGACACGAGCCTCCGCGCCTCCCTGTGGGTGGGTGCGGTTGTGGTCAGAGCGAAGCCCTCGCTTAACAGTGAGCCCTCTGTAAGTGGCCCTGGGTGGGTGCTCCTTGTCTTGGCAG
Seq C2 exon
CCACCAAGCCTGACCTCCTGCAGCAGGCGTCTGTGGGCATCATAGACCACAAGGCATGTAGCGCCCTCTACAACTTCTCGCTCACGGACAGGATGATCTGCGCCGGCTTCCTGGAGGGCAAGGTGGATTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718:ENSBTAT00000000958:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAAGGTGGAGCTGGTG
R:
GAGCGAGAAGTTGTAGAGGGC
Band lengths:
355-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]