RnoINT0153457 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11683683-11685004:-
Coord C1 exon
chr7:11684733-11685004
Coord A exon
chr7:11683820-11684732
Coord C2 exon
chr7:11683683-11683819
Length
913 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
GAGGACCTCTTTTCTGGCAGCCA
3' ss Score
4.79
Exon sequences
Seq C1 exon
CACCAAACTGGAACAGGTGCAGGCGCACTTGGGCACCGTGTCCCTGCTGGGTGTCGGCGGGAGCCCCGTGAAGCTGGGGCTGCGAAGCGTGGCCCTGCACCCCCGCTACAACCCAGGAATCCTGGACTTTGACGTGGCCTTGCTGGAGTTGGCCCAGCCATTGGTCTTCAACAAGTACATCCAGCCAGTCTGTCTCCCGCTGGCCATCCACAAGTTCCCCGTGGGCCGGAAGTGTATGATCTCGGGATGGGGCAACATGCAGGAGGGAAACG
Seq A exon
GTGAGCACATCCCAGAGAGGGAATGATGCGGTTGGCTTCCCTCACCTGGGTCCTAAACCGCTCCTTCCTTTGTGCTGACCCCGCACGCTAAGAACCACTCCTAGGGTCTTCATATGGGCCCTCATTTGTGTGTATAAATAAAGTTTTATTGGCACGAGAGCCATACATTCATTGACCATGGCTGCAAAATCGTCTGTGTCTTTAGTCCCACAGACATGAGCCACGCCTCTTCCTACGCCAGAGGTCACATGGAGCCCATTGACTGGGTATAAACCAGGATCCATTGCCCTCTGGCCCCTTACGCATCCTTTAGCTAACAGGATACATTATCACTGGGCTTTTCTTCCACATGGCTGGATAAGGCTGAAAATCTCTATGTCCTAGCGCAGTGGTTCTCAACCGTCCTAAAGCTGCAACAGCCCTTTAATACAGTTCATGTTGTGGCGTCTCCAACCACAGAGTTATTTTGTTACTTCATAATTATAATTTTACTACTGATATGAATCATAAGGTAAATATCTGATATCCAGGATCTCTGATGTGACCCCCAAAAGGACTCACTGGTCAAGAACTACTAGTCCTTTACGGACAAATTCATCAAAATGGGAATGGTGGCCTACACCTGTCTTCCCAGCACTCAGGGACATAGGCAGGAGCATCATAGATTTAAGGCCAGCCTGGGCTACATAGAAAGACACCCCCTCCAATGAACCCAAGTGGTGTGGGGTTCACGCCTGTAGTCAGTATCAGAGAAGCGGAGGCAGGAAGGGCTCAGCGAGTGCCAGCTCAGCCAGAGCCACACAGAGACCTTGTCTCAAACAAAACAAAGCAAAAATCCCTGTGGACCCTGCGGGCTGGCCCCAGGGTGGAGACAGGGCCTGCTGGCCCTGCCTGAGGACCTCTTTTCTGGCAG
Seq C2 exon
CCACCAAGCCCGACATCTTGCAGAAGGCGTCTGTGGGCATCATAGAGCAGAAGATGTGTGGTGCCCTCTACAACTTCTCCCTCACCGACCGCATGCTCTGCGCCGGCTTCCTGGAGGGTAGAGTCGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCCGTGAAGCTGGG
R:
AGGAGTCGACTCTACCCTCCA
Band lengths:
344-1257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]