DreINT0165414 @ danRer10
Intron Retention
Gene
ENSDARG00000029841 | tmprss9
Description
transmembrane protease, serine 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
Coordinates
chr22:10737737-10738430:+
Coord C1 exon
chr22:10737737-10738002
Coord A exon
chr22:10738003-10738293
Coord C2 exon
chr22:10738294-10738430
Length
291 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CATCTGTTGATCCCACATAGGTA
3' ss Score
7.11
Exon sequences
Seq C1 exon
TGACCTGAATCCTGCTGGTTACACGGTGAGTCTAGGCTCGGTCATTTGGTCTGGGTTGGGTGCTCTGGTGATCCCAGTGCAAAGGATCATCCCTCATCCTGCTTTCAATAGCAGCACCATGGACTTGGATGTGGCTCTGGTGGAAATTTCCATCCCTGCCCCCAAATCCTACACCATCCAGACTGTGTGTTTGCCTTCTCCCTGGCACAGCTTCATCAAATCTATGGAATGCTACATTATTGGATGGGGCGCTGTGAGGGAGGATG
Seq A exon
GTGAGTTTGGGATCTTTACATTGTTTATTTAACATGGAAAGACACCAAACGGCGCAGCTGCTGTCTGGTTCATGCTGACTTTAAAGTTTGGGAACTACCTTGTCTGTTTAAAAAGAGGGCTGTGATTAGACTCAAATGAACCTCAATACATTTGATGGTTGATGATACTGATTATGGGTATGTCGGGACAAATGAATTAGGATTTGGTTAAGTGTAACTTAACCTAAAATACATAGGCAACTGCTTCTGTTTGGCAAGATCCAATCTGACACATCTGTTGATCCCACATAG
Seq C2 exon
GTATGATTACAAATTTGCTGCAAAAAGCACAGGTCGGTGTTATTGATCAGTCGGACTGCCAGCGGGCTTATGGTGCTGAACTTACCGACAACATGATGTGTGCTGGCTATATGGAAGGACAAAGAGACACATGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029841:ENSDART00000145551:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGCAAAGGATCATCCC
R:
AGCCAGCACACATCATGTTGT
Band lengths:
302-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]