BtaINT0150507 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22470376-22475099:-
Coord C1 exon
chr7:22474928-22475099
Coord A exon
chr7:22470651-22474927
Coord C2 exon
chr7:22470376-22470650
Length
4277 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
AGGGTCTGTCTGCCCCGCAGATT
3' ss Score
9.53
Exon sequences
Seq C1 exon
ACTGTGGCTTGCAGCCTGGCTGGAAGACAGCTGGCAGGATTGTGGGTGGTGTGGAAGCGTCCCCAGGGGAGTTCCCTTGGCAAGTCAGCCTCCGTGAAAACAACGAGCACTTCTGTGGGGCCGCCATCATCAGCGCCAGGTGGCTGGTGTCCGCTGCCCACTGCTTCAACGA
Seq A exon
GTGAGTCCACGTCCCTGCAGGCTCAGAGCCCACCTGTATCCCATCTTCCTTCCACTCTGGGGACTCCACTACCCTGGGAGTGTCCTTGGAACTCGCTGTTTTCTTTCCTTCTCTTTTCTTTTTGTTAAATCTGAATGTATTTTAATTGTGGCAAAATATACATAACACAAATTTACCATTTCAAGTGCATAGCTCAGTGGCATTAAGTACATTCACATTGTCTGCCATGTAATCATCCCCACCATCCATTTCCGAAACTTTCTCATCTTCCCAAATTGAAATGCTGTCCCTTTAAACACTAACCCAGGGACTTCCCTGGTGGTCCAGTGGTTAAGACTCCACGCTTCCAACACTGGAGACACTCAGGTTCAATCTCTGGTTGGGGAACTAGGATCCAGCAGGCCAGGTGGCCAAAAAATAAGAACCAATCAACAACAACCACAAAATATCCATACTGACTCCCCATCCCCCCCAGCCCCTGGCCCTGCCATCTACCTCCTGTTTCTGTGGCTCTGACTCCTCTAGGACCCCCTGTGAGTGGGATCAGTGTTTGTTCTTCTGTGTCTGGCTTCTCTCACTGAGCATCGTGTCCTCAAGGTTTATCCAGGTTGCAGCAGGTGTCAGTTCTTTCCTTTTTTGGTTAAATAATATTCCAGTGTGTTGTTGGACATGTCTGTTCATTTATCCATCGATGGACACTTGGGGTTCTCCTGCCTTTTGGCTGTTGTGAATAATGCTGCTACAAATGTGGCTGTGAGAGTATCTGAGTCGCTGCTTTCAGGTCCTTTGGGTATGAACCCAGAGGTAGGATTGCAGGCTCATATGCTGGTTCTATGTTTTCTCCTTTGAGGAGCCGCCATCCTGTTCTCCACGTGGCTGCACCGTTTTCCATCCCCACCAGCTGTGCGCAAGTGTTCCAAGGTTTCCACATCCTTGAGAAGTTCCTTTAACGTTTGTTGTAAAAGCGGGTCACTATGTGGGTGGTCTGGCGGGCTTGGCTGGCCACACTGCCCTGTGTGGATGCTGTGGGCTGCTGTTTAGTGGGTCCTGGTCACGAGCTCTCTAGTTGTGGGATCCTAGGGGGCCCGGGGCTAGTGCTGACTGGCGGGTGGAGTCTGGATCCTGAAGACTGAAGTGGGGTCGTTGCCCACCCACTGGCAGGTGAAGCCAGGTCCTGGGGTTGGTGCCAGACTACTGGCAGGCAGAGCTGGTTCCTGGAGTCTGGCTGCAGGACCCGGGGATCCCAGAGCTGGTGTCAGATCATTGTTGGGGGTGGGGCAAGGGGGCTGGTTCCATACAGTCATGTATGGGTTCCAGAGTGTCCCAGAGGTTGCACTGGCTTGCTCGTGGGCAGGGCTTGGGCCTGGTCCCAGGGCAGGGTCTGGCATGCCTTGTGGGTCATGGTCTTCTTGCATCTGATGTCTGCCACCTAAGGGCTTTCCCAGTGGCTCAGTGGTAAAGAATCTGCCTGCAGTGCAGAAGCCACAGAGACATGGGTTTGATCCCTGGGTCAGGAAGATCCCCTGGAGGAGGGCGTGGCAACCCACTCCAGTATTCTTGCCTGGGACACGGCATGGACAGAGGAGCCTTGTGGGCTACAGTCCATGGGGTTGGACCCGACTGGAGCAACTTGGCGCTCACGGTGTCATCCCCCTAGTGGGTGAGGCTGGTCTAGCAGGTTTTCTGTGGTCTTGGTCCTCTGGTCGGCAAGGCTGTGTCTACAGGTGGCTATGGGATTGGGGGCGGGGAGGTCTCGAGGCAGCCTATCTGCCAATAGGTGGGCTGTGTGCCACCCCCCACCCCGATTGGGTAGCTGCCTGGCTTTGGGTGTCCCACTACCTGGCACCTGCGGGCCATTGGGTAGGGCCAGGTCTTGGGGCAAAGAGCCAAGGTAGCTTCACTAACATCAGTGTTCACGTGGCTGGATGTTCCCCAGTATGCCCCTCACTGGTGTCTATGCCCCCAGGGTGACCCCACAGCTGCCACCCCCACCTCCCCAGGAGACCCTCGGAGTCCAGCAGGCAGGTCTGGCCCAGGCTTCTATCGAATTACAGCTTCTGCCCTGGGTCCCAGTGCATCTAGGGTTCTCTGTGAGCCCTTTGAGGATGAAGCCTCCATCTCCCCCGTCCTGTGAGGGCTCCTGCAGTTAAGCTCCACCAGCCTCCAAAGACAGAAGCTCTGGGGACTCCTCTTAAAAAAGTGTTGGACCCCTGGGCCAGGGGGCCTGCTGTGCTCAGCCCTCTCGCTCTGGTGGGCAAACCTCTGCAAAGCAGTTCTTCTCCAGCTTGTGGGCCGCGCGCCTGGGGGCACGGGATTTGACTGTGTCATGAAGCTGCCTCTCCTGTCTCGCTGTGTCTCCTTCTCGGCGTCTTTAGTTGCAGGAGATCTTTGCTGGCAGGCTCCAGTCTTTTCCGTCGATGGCTGTTCTGCAGAGAGTTGCCATTTGGGTGTGCTCCTGAGAGGAGATGAGCTCAGGGTCTCTGCTGTGTCATCTTGGTGGAGCTCCCCATTTCTCCACAGCCTTGCCATTACTTGTTACTTTGTTTGCTTGTTTTGTTTTTTATTAGTTTATGTTTTTTGGCCACTTGGCATGCAGGATCTTAGTTCCCCAACCAGGGACCAAACCCATGTCCCCTGCTTTGGAAGTGCAGAGTCCTAACCACTGAACCACAAGGGAAGTCCCTATTTGTTTAATAATGACCATCTTAGTGGCTGTGAAGTGGCGTCTTATTGTGTTTATTTTTAATTAATTTGTTTTAAATTGGAAGATAATTGCTTTACGCTATTGTGTTGGTTTCTGCCATACATCAGCATGAATCAGCCACAGGCATGCTTATGACCTCTCCTTCTTGAACCTTCCTCTCACCTCTCACTGTAGCTTTGACGTGCATTTCCCTAATGATCAGTGATGCCGGGCATCTTTTCATGTGCTTATCGGCCATTTGTGTGTCTTCTTCGGAGCGATGTCTGTTGAGGTTCTTTGCCCGGTTTTGAATTGGGTCGTTTCTGGTTGTTATTGAAGATGGTCAGAATCTTTACAAACCAGAGTGGCCAATCAGAACGGAGCTGGCCAAAGGAAGGGGAAGGTTCTGGAAGGCTCTGGGTGTGCCAGGCATTGCTAGTTGGTTGTTTCCATCTGAGGAGTCCTTGGGGAGAGGGCAGGGCAACAGGCAACGTGGACTTCCCTGGGAAACCACTGCCTGAGAATATCCGTGGGTCAGGCGGTCGCTAATTCCCAGGGTAACCTGGCTCTGGTCCTGGGAAGACTATCTGGGGGACACAGGTCACATAAGCAATGACATTCAGGTCAAGAAGAGTTGTTTTCTTTTTATCATTTTAAATTTCATTCCTCTCATCATTTTATTATGAAAATATTTCAATAGAAAAGATGGAAAAATAGTACAACAAATACCCATATGCCTGTACAGTAAGTCCCCTACATACAAATTAGTTCCATATTGAGAGCACATTCATTAGTCCAGTTTGTAAGTCTAACAAAGTTAGCCTAGGCACCCAGCTAACACAGTCGGTTATATGCTACTGTACTGTAATAGGTTTATGATATTCTTTATACAAATAATACATAAAAAGCAAACATAAAGCATAAAGAAAACATTTTTAATCTTACAGTACAGTCCCTTGAAAAGTACAACAGCTGGCATACAGGGGCACATTCACACCTTTGAAAGTTCCCAGCTTGAAGATTTGTATGTAGGGGATTTACTGTACCTGATTTCAAAAGTTGTTACTATTTCACCATATTCTCTTTCTCTCTTACTCTCTCCATCTGGCTGTATCTATAATCTATACCCCCCACACCTCTTCATACATACATATCCTTGCCAAGCAGTTTGAAATTAAGTAGAAAACATCATAATGCATCACCTCTGAGGCACCCTTGCACATTTGGACAACTAAAAAACAGTCTTGAATACACATATACCATCACACCCGAGGAAGTTTAAATGGCTACACGGTATCATCTAGTGCACAGTCCTCGTTCAGTGCCTCCTCTCCTCACCCTAATCCCGGCCCTGTGGATCCTGTCTTTGTTTAAAATGTTGATAATTCATGCACCGTGTTTTAATTTTTGTGCATTCGTTCTGATTTTTGCCAATGTTTCATGGAAAACATTCCCATCAGTTTCCATGGCTGAGTTTGGGGGCACCTGCCTCTTGGGTAAGTGCCCCGCTCCCCTCCCCACCCTTCCCACCCCACCCCTACCCCCCGGCTCCAGCCTTGGTGCGCCTCTGAGCCAGGGTCTGTCTGCCCCGCAG
Seq C2 exon
ATTCCAGGACTCCCCGGAGTGGGTGGCTTACGTGGGCACCACCTACCTCAGCGGCTCAGAGGCCAGCATGGTGCGGGCCCGCGTGGCCCGGATCATCACACACCCATCCTACAACTCGGACACAGCTGACTTCGACGTGGCGGTGCTGGAGCTGGGCAGACCCCTGCCCTTCAGCCGGCACGTGCAGCCCGTGTGCCTGCCGGCTGCCTCACACATCTTCCCACCAAGGAAGAAGTGCCTCATCTCAGGCTGGGGCTACCTCAAGGAGAACTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718:ENSBTAT00000000958:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.2=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(40.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]