HsaINT1044733 @ hg38
Intron Retention
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2405374-2408630:+
Coord C1 exon
chr19:2405374-2405545
Coord A exon
chr19:2405546-2408355
Coord C2 exon
chr19:2408356-2408630
Length
2810 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
3' ss Seq
GCTGGGGTTTGCTCCTGCAGGTT
3' ss Score
8.43
Exon sequences
Seq C1 exon
AGTGTGGCTTGCAGCCTGCCTGGAGGATGGCCGGCAGGATCGTGGGCGGCATGGAAGCATCCCCGGGGGAGTTTCCGTGGCAAGCCAGCCTTCGAGAGAACAAGGAGCACTTCTGTGGGGCCGCCATCATCAACGCCAGGTGGCTGGTGTCTGCTGCTCACTGCTTCAATGA
Seq A exon
GTAAGCCCCCATCCCAAAGCACCAAACCCGAACCCTCTGTATTTCTCCTGCCTTCCCTCGTGCACTGGGGACGTCACTTCTGGTTTCCTTAGAGCCCCTGGAAGTAATTTTTTCTTTTCCTTTCTTTCTTGCTTTTGCTGTTGTTGAATCTGAGGGCATTCTTTTTTTTTTTTTTTTTGAGACAGAATCTCGCTCTGTTGTCCAGGCTGGAGTGCAGTGACGCGATCTTGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCTGTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTTGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCATCGTGCCCGGCCTCTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGAATACAGGCGCCCGCCACCACGCCCAGCTAATTTAATTTTTTTTTGTATTTTTAGTAGAGTCGGGGTTTCACCATGTTAGTCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGCGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTCTTTATTTTATTTTATTTTTTCTTTTGAGACAGAGTCTCAGTCTGTCGCCCTGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCCACCTCCTGGGATAAAGCAATTCTCTTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCACGCCACCATGCCTGGCTAATTTTTTTTTTTTTGTATAATTAGTAGAGATGGGTTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGTCCTCAGGTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCCACTTGCTGTTCTTTTGAGAGTAGCCATGCCAGTGGGTGTGAAGTAGCATCTCCCTGTGGTTTTGACTTGGATTTCTCGGTGACCAATGACATTTTGTTGATGTTTTGCTCATTGTGGACATTTTTTGCATTCACTTTGATTTTTTAAAATATTCTGTCGTGATATTATCCTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCCTGCTGGAGTACAGTGGTGCAGTTTTGGCTCTCTGTAAGCTCCACCTCCCGGGATCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCCGCCACCATGGCTGGCTAATTTTTGTATTTTTAGTAGAGACGTGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCTGCCCGTCTCTGCCTCCCAAAGTGCTGGGATTACATGTGTGAGCCACTGCACCCGGCTCGATATCATTTATCTTGATGGCTGAGATTTTTGGCAACTCTTTAAATTTTGTGCCCAAGGCTCATGGCTGGCTCCCCTCACCCTAATCCCAACTCTGTCTCATCCTGTCTTTGTTTAAAATGTTGATACTTGGACAGGCTATAGTGAGCTTGTGGCTCATGAGTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGGGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAAGCTTGTCTCTACTAAAAACACACAAAAAAATTAGTCGGGCATAGGGGGCGCAAACCTGTCATCCCAGTTACTTGGGAGGCTGAGGCACGAGGATCACTTGAACCCGGGAGGTGGAAGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGTCTGGGAGACAGAGCGAGACTCTGTCTCAAAAAAACAAAACAAAACAAAAATGTTGATACTTCATGCATCATGCATTCTCCTGCACCTGTGATTTTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTGAGACAGGTTACCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAGTGATAGCTCACTATAGCTCATGACAGCCTCAACCTCCCAGGCTCAGGCAATCCTCCTACCTCAGCCTCCTGAGGAGCTGAAACCACAGGTGCACATCGCCACACCCCGCTAATATATATATATTTTTTCTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATATCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCTGCCTCAGCCTCCTGAGTGGCTGGGATTACAGGCGCCCATCACTATGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAATTCCTGCCTTCGTGATCCTCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCTGGCCTGTTTTTTGTTGTTGTTTTTAAAGACTGTGTTTCGCTATGTTGCCCAGGCTCGTCTTGAACTCCTGGGCTCAGGTGATCCTCCCGCTTCAGCCTCCAAAAGTGTGGGATTACAGGCATGAGCCACTGTGTCTGGCCTGATTTTTATAAATACTATTCATAAATATTAATGTGGGGGGATACCCCTTACATTTTGCACCCAAGGCGAGTGTCCCGTCTGCCTCCCCCGACGGCTCTGACCCTCGGTGGCTTCTGAGCTGGGGTTTGCTCCTGCAG
Seq C2 exon
GTTCCAAGACCCGACGAAGTGGGTGGCCTACGTGGGTGCGACCTACCTCAGCGGCTCGGAGGCCAGCACCGTGCGGGCCCAGGTGGTCCAGATCGTCAAGCACCCCCTGTACAACGCGGACACGGCCGACTTTGACGTGGCTGTGCTGGAGCTGACCAGCCCTCTGCCTTTCGGCCGGCACATCCAGCCCGTGTGCCTCCCGGCTGCCACACACATCTTCCCACCCAGCAAGAAGTGCCTGATCTCAGGCTGGGGCTACCTCAAGGAGGACTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297:ENST00000332578:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.2=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(40.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains