MmuINT0162799 @ mm9
Intron Retention
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80350129-80351305:+
Coord C1 exon
chr10:80350129-80350300
Coord A exon
chr10:80350301-80351030
Coord C2 exon
chr10:80351031-80351305
Length
730 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
ACCCCCTCGGGCCTCCCCAGATT
3' ss Score
6.88
Exon sequences
Seq C1 exon
ACTGCGGCTGGCAGCCTGCCTGGAGGTCAGCTGGCAGGATCGTGGGAGGAGTGGAGGCGGCTCCCGGGGAGTTCCCCTGGCAGGTCAGTCTTCGAGAGAATCACGAACACTTCTGTGGCGCCACCATCATCGGTGCCAGGTGGCTGGTGTCTGCTGCCCACTGCTTCAACGA
Seq A exon
GTGAGTCCCACCTGGCCGTGGCTGCCAGCCCTGCTGCTCGGCACAACCCACCTGTGTTTCCCTGTAACCCCTCCTTCCTTTTTCCAAAGTCCACTCTTTATTCTCCCCCTCTCCCCTTGGTTTATTTAATTACATCTATGAATGTTTTGCTTGCATGTCTGTTGATGCACCATATGCATGCCTGACTCCTATAGAGAATGGAAGTGGGCTTTGAGTCCCCTGGAACTGGAGATGGTTGTGACCCATATTGTATGTGGGTGCTGAGACTCAAACCTAGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGTTTTTCGAGACAGGGTTCCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGAACAGGCTGGCCTCGAACTCAGAGATCTGCCTGTCTCTGCTTCCCAAGTACTGGGATTAAAGGCGTGCACCACCACTGCCCAGCCCTGCTCAGCTTTTATTTAGCATCTGTATGTGCCATAATATGTGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGACAACTTGCAGATCTCTCCTTCCACCATGTGTGTCCCTGGAATTGAACTCAGACAGGCCGGCTTGACCACAAGAGTCTGTTCGCATCCTTTACTGTTTTAAGTTATGGACTCGTCGGAGCTCCTCGTTAAGTCGCACCCCCTCGGGCCTCCCCAG
Seq C2 exon
ATTCCAGGACCCTGCGCAGTGGGCCGCCCAGGCGGGCAGTGTGCACCTGAGCGGGTCAGAGGCCAGCGCTGTGCGCACACGCGTGCTCCGCATAGCCAAGCATCCTGCCTATGATGCGGACACAGCGGACTTCGACGTGGCGGTGCTGGAGCTGGCGCGCCCGCTGCCCTTCGGACGCTATGTGCAGCCTGCCTGCCTCCCCGCGGCCACGCACGTCTTCCCGCCGGGCAAGAAGTGTCTGATCTCGGGCTGGGGTTACCTGAAAGAGGACTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-Tmprss9:NM_001081688:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.2=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(40.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGTCAGTCTTCGAGAGA
R:
AGCCCGAGATCAGACACTTCT
Band lengths:
345-1075
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: