BtaINT0150967 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015650 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr16:57829407-57830362:+
Coord C1 exon
chr16:57829407-57829539
Coord A exon
chr16:57829540-57830210
Coord C2 exon
chr16:57830211-57830362
Length
671 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GTCCTTCTGCTTGGTTCCAGTTG
3' ss Score
8.24
Exon sequences
Seq C1 exon
GAGGTGCAGCTTGGAAGAGGGGACCAGAGGTTTGAGTTGCAAGGCCTTGAGCAGGGTGTCACCCTGCCTGTCTCCTTGGTTGCCTTTAAGGGTGATCGCCGGAGCAGGAGTGTATCTACAAACCTTTCCACAG
Seq A exon
GTAATGTGACCTCATGCACTCTGAATTAGACTGCAGTGCAGGACAAGCATGGGACAAGCCAGAAAATGTGTCCAAGGAAGAGCGAGTGGCGACAGGGCTCTGGATTTCTCTAGACAAGGGGAAATGGAAGTGGGGTTATGAATTCAGAAGAAATCCATCCCATGGTAAAGAGATGAAGGAAGGGAGTGAAGTGGAGTATTGTCTGGTGGAGGGGAAGAGGTGGGGCTTTGGTCAGAGGAGGAAGTGATATGAACTTGACCTTATTTGGTGGCACCAGTGGTAAAGAACCCCCCTGCCAATGCAGGAGACGTAAGAGATGTGAGTTCAGTCTCTGGGTTGGAAAGATCTACTGGAGGAGGACATGGCCAACCCACTCCAGTATTCTTGCCTGGGGAATCCCACAGACAGAGGAGCCTGGCAGCTTGCGGTGCATAGGGTCACAGAATTGGACACTGAAGTAATTTAGCACACACTAGTACATTTGAGGGGTTTGATGAGAGCAGGGTGAGTGAGAAAAATAAGATGTGAGTGAAGAGTTGGAAGATACAAAATAGTAGGAGGTTCCAAAATAATTTCTAAACAAAATAAATGATCTTAAAATACGGGACTAGCCCCACTCCCCTCCTCCCATGCCTTTCTCCTAACAATGCTGTCCTTCTGCTTGGTTCCAG
Seq C2 exon
TTGGTGCCCGTTTTCCACACCCTTCGGACTGCAGTCAAGTTCAGCAGAACAGTAACGCCGCCAGTGGCCTCTACACCATCTACCTGCATGGGGATGCCAGCCGGTCCCTGCAGGTGTACTGTGACATGGACACAGATGGAGGCGGCTGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015650:ENSBTAT00000020785:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(45.6=80.0)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(20.8=86.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCAGCTTGGAAGAGG
R:
CCGCCTCCATCTGTGTCCAT
Band lengths:
278-949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development