RnoINT0153911 @ rn6
Intron Retention
Gene
ENSRNOG00000002548 | Tnn
Description
tenascin N [Source:RGD Symbol;Acc:1306002]
Coordinates
chr13:77848427-77849129:-
Coord C1 exon
chr13:77848997-77849129
Coord A exon
chr13:77848582-77848996
Coord C2 exon
chr13:77848427-77848581
Length
415 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GTCCTTCTGCTTGGTCTCAGTGG
3' ss Score
7.03
Exon sequences
Seq C1 exon
GAGGTGGAGCTCCAAAGAGGCCAGCAGAGATTTGAGTTGCAAGACCTGGAACAGGGCGTCACCTATCCTGTTTCTCTGGTTGCCTTTAAAGGTAATCAGCGGAGCCGGAGTGTGTCTACCACCCTTTCTACAG
Seq A exon
GTAATGTGGAATCTAGCCCCTTAAGTGACAATAAATAATGGGGGCCATTGGAGAAGCCAGGGAGGAGCATGGGGTTATGGAGAAATGAAAATGGGGTTCTGGTTTGCAAGCAAATGGGACTAAAGAGGGAGGTGGCAAGGCTAGGACACCTAGGAGAGTTGACATAGGACACTGAGGGACATAAGCCTAACTTAAAGGTGCATTTGCAGAGTTTGATGGGAGCAGAGTGATGGCCAGCTTGCCGTCCTTCTAAACACATGTTCCATGATCAATTTGTGAGCTAAGAATTGGAAGAAGCAAAATAGTTAGGAAACTTTGAAACAATTTCCAAACCAAGCGAATTGCCTTGTAATGGGGAAAGCCGCAATGTCTCTTCTTTTCTTCCTAACAACTTTGTCCTTCTGCTTGGTCTCAG
Seq C2 exon
TGGACGCCCGATTTCCACACCCCTCAGACTGCAGTCAGGTTCAGCAGAACACCAATGCTGCTGCCAGTGGCCTCTACACGATCTACCTCAATGGCGATGCCAGCCGGCCCATGCAGGTTTATTGTGACATGGACACGGATGGAGGCGGCTGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002548:ENSRNOT00000003452:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.160
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(45.6=80.0)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(21.1=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAGAGGCCAGCAGAGAT
R:
AATCCAGCCGCCTCCATCC
Band lengths:
278-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]