HsaINT0170326 @ hg19
Intron Retention
Gene
ENSG00000120332 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:22942]
Coordinates
chr1:175097168-175097882:+
Coord C1 exon
chr1:175097168-175097300
Coord A exon
chr1:175097301-175097730
Coord C2 exon
chr1:175097731-175097882
Length
430 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TCTCTCTGCTTGGCTCCCAGTTG
3' ss Score
8.14
Exon sequences
Seq C1 exon
GAGATGCAGCTGGGACGGGAAGACCAGAGGTTTGCGTTGCAAGGCCTTGAGCAAGGCGCCACCTACCCTGTCTCCCTTGTTGCCTTTAAGGGTGGTCGCCGGAGCAGAAATGTATCCACCACCCTCTCCACAG
Seq A exon
GTAATATGGAATCCTGTACTCTGAACGACCGTGCAATGAGAACCAGCACCGGAAAGCCTAGCAAAGGAGTCCAGGGAGGAGCAAGTGGATGCAGAACTATTGATTTCTCTAGGCATGGGGAAGTGGAAATGGGGTTGTGTGTTCAAAAGAAATCCACCCCACAGTGGGGAGGCTAAAGAGAGGAGTGAAATAGAGTGTTACTTTGTGAGGGAGCTGAGTTGGGGGAGGAAGTGATGTGAACTTGACCTTTTCCTGGTGCATTTGGGGAGTTGATGAGAAAAATAAGATATGAGTGAAGAGTTGGAAGAAGCTGAAGTAGGAAGTTATGAAATAATTTCCAAACAAAATAAATTGCCTTAAAATAGGAAGAAACTCCACCTCTTTCCTCCTTGCCCTTGTCCTAACAACACTCTCTCTGCTTGGCTCCCAG
Seq C2 exon
TTGGTGCCCGTTTCCCACACCCTTCGGACTGCAGTCAGGTTCAGCAGAACAGCAATGCCGCCAGTGGTCTGTACACCATCTACCTGCATGGCGATGCCAGCCGGCCCCTGCAGGTGTACTGTGACATGGAAACGGACGGAGGTGGCTGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120332-TNN:NM_022093:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(44.9=77.8)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(20.8=86.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGGACGGGAAGACC
R:
AATCCAGCCACCTCCGTCC
Band lengths:
278-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)