BtaINT0150968 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015650 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr16:57830211-57835785:+
Coord C1 exon
chr16:57830211-57830362
Coord A exon
chr16:57830363-57835688
Coord C2 exon
chr16:57835689-57835785
Length
5326 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
ACACCAGTCTCCCTTTTCAGGTC
3' ss Score
11.08
Exon sequences
Seq C1 exon
TTGGTGCCCGTTTTCCACACCCTTCGGACTGCAGTCAAGTTCAGCAGAACAGTAACGCCGCCAGTGGCCTCTACACCATCTACCTGCATGGGGATGCCAGCCGGTCCCTGCAGGTGTACTGTGACATGGACACAGATGGAGGCGGCTGGATT
Seq A exon
GTGAGTCACACAGAGCCCTGGGCAGCTCTATTTCTTCTTCATCCATGGGAGAGAGACGCTTTGGTACCTTGCAGCTATTTTCAGAGAACAGAGAACTGTAAGAACAGAGCCTGAGGTACTTGATTCCTGGGATAGAGCAGGCTTGATTACATTCAGGCTGATGTTTGGGAAGGCTTGTGGGTTTATCACCATCTATTAATACTAATGGCCTCTTTACATCAGTTGCCTACATTTTACTCTCTGCAAAGCACACTCATAAACATGACCTTCACATATAAGCTATAGAATGAGAGAGATTATTGCTCATACTTTATAGATGGGTAGATTGAAGCCCAAAAGGAGAAGTGCTCTGACCAAGTCACATGTCATTCAGTTGATCAGTCATGTCCGACTCTTTGTGACCCCATGGATTACAGCATGCCAGGCTTCCCTGTCCTTCACCATCCTCTGGAGTTTGCTCAAACTCATGTCTACTGAGTCGGTCACATGAGTTAATAACAAAGTTGGGACCAGATTCTAGGACTCCAGCCTCCTGGGTCACTGGTTTTCCCAGTGGGTCATCTCAGGTCACCCAAGATGGAAACACACGGCCTCTTTGGGGGCTCAGTCCTCTGAATTTTGGAGCCTGTTGTCCAAGCTCTGCATCCTGGCTCCACAGTACAGAAGCAGGGCCTTTGGAACTTTGATACGAAAGGCTAAACCCTGAAAGAGGGAAACTTGCAATGTTCTGATCATCTCACATCTGTGTGGAGGTTTTATTTTCTGTGGGCCATTAAACCGCATGGTACCTTCTTTGATTGCATCTGCTGATCCAATTATATGATGAGCTGCTTTTGAGACTTTCAATCTGATCTTTCCACTTCTCCTTACCACCTTCTCCCTGTGCCTGAACAGTGAGAGGCTCTCACTGCTCCAAACCAGCCTGCAGCCTGACCCACTGTGCTTCCACCACTTGCTGTGGGAAGGAGAAAGCATGATCTCATAGAGCTCAGACTATATTCCTTTACACATTCGTTCAGGGCCTGTGGAACCAAAGACACTCGAGCAGCCACAGATAAAATGATACCATCTGATAAGCAGCAAAGAGGAAAACTTATTATCCACACAGCTGCATCTGATGGCCCAAAGGCAGAAATGGATCAGATGGGGGACATTCTTGATTGATTTGTAAAAATAATAGAACCGAGTGTCACATGGAGGCCATCTACCTGACTAGACTCATAGGGCTGCACCTGCTGTTCTCCTCAGCACCACTGTACCTCTGCGCTTCTGTCCCTTCAAGCTTGAAGCCAGTTCCCTGCCTTTGTCCCTGTAGTCACCCATTGGCAGGATGTCTGTACTGTCCAGTGTGGTCTTTTTGTTGTTTCTTTGTTTGCTTTCGGGGGTGGACGGTGGTGTGCTGCATGGCATATGGGATCTTAGTTCCCCAATAAGGGATGGACCCCATGCTTCTGGCTTTGGAAGTGCAGTATCCTGACCAATGGACCTCCAAGGAAGTCCCTGTTGATGTGGCCTTCTTGAAAGCCAGCCTCACCCAGGCAAAGAGATGTGTGTCTGGGACAATTTTTTGAAAGAGACCTGTTGCTAGTCTGTCTGCCTGGGAGTATCCATGATTCTTTTCCACTAATATTTATTGAGTGCCTACTATGTGTCACGTACTGTTCTATATACTTAGGAACCAGCAGTGGACCAAATAGACAAAAATCCCTGACCTCAAGGAGCTTGCCTTTTACATCTTGCCCACACAAGTGACCTTTGCCAGAACACAGAGGTCAGTTCCAGAAATAACTCTGGGTTCCCACCAATGCCAGTGCCCCATCCCCTCCCTAGTCTTGTTTTCTCACCCAGGTTCCTGAAGATACTACATGAACTGAGACTCTATAGGGTTCTCCTCGAAGCCACTACACTCCAGAAAATATGTGGAGTCCTGCAAACCTCTCCACTGAATCTTTTACTGGCAATTTCCATGTTTTGGGGTGTTCAAAAGTCTTCTGTCACTGAAAGATGATCATAGTATATTATCCTTATAAACTGAGCTTCTCAAATCCTTTTAAGGAAATTCTTCTCCACTCAGGCAGCAAGAACACAATTTGATTAACTTGGGTTAGCCAGAACTCTGCCCTGAGGTAACTGAGGCTACGGGTGGGAAGCTGGAATGGAGACTATTAAGGAACGCTTAAGTGTCTCAAATATTTCCATTTCTGTTTCCCATCTTGCAAGTCCTAAGAACTACATGAGAGGCTCTTTCCACAGGCATCTAAGTGAGATTTTCATTTTTTCCTCCTGATTTAGTCATTTAGGACTGAAAGTTCTAGAGTACAACAAAGCTCTGTTGTTAGAATCAGACAAAGATTTTTTTCTCCTTTGAGATTTATTTGGCAAGGGGTTTCTGTTATCCCAAATAGTTCATTATAAGGTATTTTCACCTCATAGAAGGGAATGGACTAGATTCTCAGTGAGTCAATTAAGGCTGCCTTATCAAGATGTACAAATGATCCCTGTGGGTCAGTTCATTTGAAATCTGACATTATAAAATGCAAGCTAACACATTTACTGAGATATAATAATCACTCATTATATCTGTATGAGCCAGACTCTGGCCTTTATGATTTATCATGATTCATGACCATGCTGAAGCCTTGATTTAAGATAATGACAAATAAGCTATTAACATCTTGATCTCATAGTTTAGAGAAGTGAGGCTAGTCAAGGCTAACTGACTTGCCCAAGGAGACAGCTAGTAAGTGTAGAGCTGGGTCTATAGTGATGCAAAGAGCATCAGAACCTTTTTTTTTTTTTTCCAATTTCTCTAGCCACACTGAAGCATTAGTAAAATAAACAAATAAACAAACAAAAAAATACTTTGGCACTATGTTCATTGATTGGAGATAGAGACCAAATGCCTTTGTAAAGCCTCTGTCCTAGGAGAGTGGGATCAGATTTGAGCCTGACCTTACACGGGAACTAACTACATTAGTGGGAATAGAATTTGGTGCAGTGTGTATGGAACCAAATAGTGATGCCCTAGGATTTCATTGTTCATGATCCAGGAGTCCCAGGTGCCATAATAGGAAATGAACAGCCCCAGAATCTTAAGGCATGCTCTTTAAACAGTAGACTCCACATAGCTGGTGTTTTCAGACTTCCTCAGGGAGAGATGAGGCAGTCTTTTATCTTTGCATCAGCCACTGAATAGTTGGCTGTGTGACTCTATTTGATTTTCTACACTTTCTCATCTGTAAAATGGCATTGTATATTCTTGCCCTGGAGTCAGCCTTTAAAAATGCTCAACGAGCACTTGTTACATAGATCAGTGAGTGAAAAGAGAAATCAAGGAAGCCAGGGAAGGAAGGTGGTGTCTCTACAAGATGGACACATAAGAAGAGGGGAGAGGGAACAACAGTGTTAGTGAGTGTTAGTGCAGTTGTTCACCGTGAGCATCCCTAAGTTCTGCTCGCAGCTCTCTACCCTTCACACACCCTGTCTCACGAGTCCTCCTAGCACCTCTAGGGGCAGACACCTCCTTCCCGCTTCCAACCCTGTTGGACAACAAGTCGACTGATGCTCAGGAACAGAAATGACTGAGTCACCAACCCCCTGCCAGGACCCCCACCCTTCATTCAGTGCCCCCCAGGCCAGCAGACAGGGACTGATGCTTCAGGAGTTGGCGGTGAGCTCTGGGCACTGTTGTGGGCAACCTGCTCTCTCCTCCGTCCCTGTGTCTTCCCAGAGAAAAATGTATCAAGAATGCTCAAATATTAGGAGGTCTACCTCATCAAATTCCAGATGAAGTGGTTGACTTCAAGGCACATGGTAGAAAAGAGGGGGACTGGATTTTGTGTTGGGGCTTCTGCTCTTGAAGGAGCGCAAAGGACAGAAGGTGGAGAGGAAGATGCCACTCCATTCCTAGGGAGTTCCAGACTCCTGTGTGGGGTTAGCTAGGGTGGCGTCTAGCTTGGCTGCCAAGGCCAGGAGGAATTAGAAGTGCAAAAGCATACATAGGTGTCTTTAGCCTTTAGATGCTTTTTAGATTTACTTCATAAAAAAGAATTGAGTGATTCTGACCAGCACTGCCTCCCTTCCCCAGATGGAGGGATTTTTGAAAAGAAAGCAGCCCATACTCGCATGAAACAGCCCCAACTGTGTCTCTGTGTTGTCCCTTCTCACTCACTCTTCAGCTGAAACTGGTTGGCTTTCTGCCCTCATCACTCACTAGCACAGCCTTCACTCAAGTCACCGGTGCTTCCGTGTCACCAGAGTCTGTGGGCAGTTTGGGCATCACGCTCCCTGACTTCTCACCAGCATGTGACACTGTCGGGCACACTTTCCTCTGGTGGCCTTTCTGATTCCACATTTTCCCGGTTGTCCTTCATATCACCAGCTGCTCCTCGTTCTCCTCCATGAGCTCATCCTGTGGTGTGTGGCTCTTATATCTTGGGATCCACAAGGCTTCATTCTAGGCCACTTGCTCCTTTCAGTCCTGTTTTTTATCTCATCCTTCCAATGGCTTCATCTCCCTCTCTGTGTCCTGATGGCTTTCCATGTTAGGATGGAATGGGCTAAGCCGTAGTAGCAAACTAACACCTAATTCCAGTGATTTAACCCATAAAAGGCTTTTTTTCTGACGTGTGCAAAGTCACTACTAAGTGGTGACTCAGGGATTCAGGCTGATTCCAGCTCATGGTTCTGCCCTCTTGACATGTGGCCTTCACCATGGCACCATGGCCTGGGGCAATGGGGGAGAGAGTGGGGAGACCCCCACCCCACACCCTGTGCCCCCGCTTTTAGTCCTGTAGCTGGAACAAGTCACACGGTTCCAACTTAACTGCAAGAAAGGCTAAAACAAAAAGTCTCTTTGTGTCCTGGAGGAGAGGAGAGTGAAATTGGACTTGGTGAGTGCCAGCACTATCTCAGACACGTGCTCACCTTCTAAGTCCAGCCTGGCCCTCTCCTGAGAGCTCTGGCCCTTACATTCAGCAGCTCCTATGGCACCTTCATTCACCAGGATACCTCAGAAGCCACTCACACTCTCTAGGTCCCCAAATGAGCGAAGTTGCCCCCATGGAAACTGTCCTGTCTCAGAGCCCCTTTCTCAGCAATCGACAGAGTGAATTCCCATCAGCACTGGGAGCCCAGAACTCAAAAGGCAGTCTTGACGTCCTCCTCTCTCTTGGTTCCACTTCGGTCCATCACCACCCCCGTCAGTTTCACCTCCTGGCCACTTCTGTCCATCTTCAGGGCAGCCCCCAGCGTGCCATGCTGTCCTCTCTCATTCAGCCACGTCTGTCCACGTGTGTCAGAGAGAAACACCAGTCTCCCTTTTCAG
Seq C2 exon
GTCTTCCAGAGGAGGAACACCGGGCAGCTGGATTTCTTCAAGCGCTGGCGGACCTACGTGGAAGGCTTCGGCGACCCCATGAAGGAGTTCTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015650:ENSBTAT00000020785:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(20.8=86.3)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development