RnoINT0153912 @ rn6
Intron Retention
Gene
ENSRNOG00000002548 | Tnn
Description
tenascin N [Source:RGD Symbol;Acc:1306002]
Coordinates
chr13:77842018-77848581:-
Coord C1 exon
chr13:77848427-77848581
Coord A exon
chr13:77842115-77848426
Coord C2 exon
chr13:77842018-77842114
Length
6312 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
GCATTCATTTTCTTCCTCAGGTC
3' ss Score
11.13
Exon sequences
Seq C1 exon
TGGACGCCCGATTTCCACACCCCTCAGACTGCAGTCAGGTTCAGCAGAACACCAATGCTGCTGCCAGTGGCCTCTACACGATCTACCTCAATGGCGATGCCAGCCGGCCCATGCAGGTTTATTGTGACATGGACACGGATGGAGGCGGCTGGATT
Seq A exon
GTGAGTCTTAATGGTGCCCGGAGGAGCTCCGTGGAGCGTCTTGTTTCTTAGCCCAGGGAGATGGTCACAGCTATTCATGGAGGTTATATTTCATCTCTGTCCACGGGGAAAGGAACTTTGATGGCTTGTAACTGTTTGGAGAGAGATCTTATCCCATTGCAATGAGAGAATTTAGGGTTTAACACTGGTCACAGAACAGGGTTGGTTAAACCAGGGCTAAAGACTATGAGTTTAGCATCATCTAATAATGTCAGATGTGTGTATTACACGGCCTTCACATGATGCTTTAGTATGACAGGATTATCATTCTTGTTTTACAAAGAGGGAAGCTGAAGCTTACAGAGAAAAGATCTCTGGTTGAGTCAGTCACACATGTCAGTGACATTGCTGGAGCCACATTCCAGGAGACAGGGCGTCAGATCCTGGGTCTTCCTAATGGCTCATGTCAGGTCACCCAAGATAGAAATGCATGGCTTCTTTGGGAGAATCAGTCCTCTGAACTAGGTCCTCTTGTCTTTGGTCTATATCTTGGCTCTGTAGGGCAAAAACCAAATTCTAGGGCTTTGATTGGAAAGAGTAAAGCCAGAGCCAGAGAAGCTAGGACTGTGTCTAAGCTGTCCCCTCTGCCAAGAAGTTATACTTTCTTGGGCCATTGTCTCCTAACACTCAGAGTTCTTTCATTGCTTTCTGATTCGGTTCTATGATGAATCTTTGAAGATTGCAGGTGGGTTATTCATTCTTTCTCTCTCACTTGGCTTCTCCCTGAGTCTGAACCAATTGAGGGTCTTATTTTCTCTAATGATAGGTGGCTTTCACCTGCGAACATTGGAACCAATTGTGGGAGAGAGAAAGCATGGTCTCATAGTGTCTAGCTATGTTCACTTACACATTTGCTCAGGGCTCTGGGAAGCCAGATATCTTTGAGCAGTCCCAGGTAAAATGGTATCATCTGATGAGCTGCAATGAAGAACACTTAGTGTCCACACAATGACAAAGAACAATGGAAAGTCTGTTTCATCCAACAATTGGTTGATGGCAGAAACTCTTGATTTATGAAATAACATAACAGATTGTAACTTGGAAGGTCTCCCACCTAAGCAGCCCCATAGGTCTGTGCCTGCTGCTTTTCATCTGCACCACTGAACCTGAGCGTCAGTTCCCTCAGGCCCACAGCCCGATTTCCCACCGTTGTGCCTGTAATTGACCACTGGCAGGATGTCTGTACTGTTTAGTGTGGCCCTTTTTGAAAGTGAAGCCTATGCAAGGAAGAAACCATTTAACTAGGGCAGCTGAGAGGGAGAGAGGGAGACAGGGAAGGGAGCAGGGAGAGAGAGACAGAGTCATACAGAGACAGGCAAAGAGATAGAGAGATAGACACAGAGGCACAGAGACACACACACAGAGAGACAGGGAGACTGGGAGGGAGGGAGAGATGGAGGGAGGGAAGAGGTGGCGATAGTTTGTCTCTCTGCACCATGATATATTGTACAAATATTTATTGAGTACCTGCCATGTGTCAGACATAGACTAACAATCCAGGAATGAACAAATCAGATGAATCTCTGACTTCAGGGGTCTTGCTTTCTGTATACCCATACAAATGGACCTGACTTAAACACAGTAAGTTACAGAACTACCGAATCTACACAGCACTGTAGCTGGTAGCAGTCTCAACCCACACCATCTCATGTTTGTTTCAGCCTCCAGGAGGTAATACACGCAGACTATACAGAGGCCTCTCTAGGCCGGGGGCTCCAGAAGACATGTGGAGTCCCAAAACCTTCTACTACATATTTCACTTAGGGTTTGGGGGTTTTATTTGGTTCCAGGGCCTTCTGTCTCTTAAAGATAACCCAAGATTCTATTGAGTTTTTAAAATCCTTTTATGGAAGTTGTTCTCTAGTCCAGGCAGCAGGCACCTAATTTGATGAACAGGCAGAAGGACTTTGCCTCCAAGGCAACCCAGTTGGCTAGGAGGAGGTTGGAAAGAACATCAGGGCACACTTAAAAGTTTCAAATCTTTCCATATTGGAAGTCTAAGGGCTGCACCAGAGGCTCTTTCCACAGGCAGTTCAATACACGCTTGACTTTCTTCCCCTCCTGATTTAGCCATTCACAGTAGTGAGTAACTTCTCCAGGACGATGATTATAAAACCCAACATAGATATTTTACCACCTCTTAAGATTTATCTCCTTTTACTATTTTTAGCCTCAATCAAAGCCATCTGATTGAGATGTAGAAATTATGTGTATGGGTCAGTATACTTAAAATATGATCTAATACAATGCAAATCAACAATTATTAAGACATAATAATGACTTACTGTTACCTGTATGTGCCAGGCGTTGCTGCTGTATGACTTGCTGACCTTATTAAATGAAGACCTCATTTAAGCTCCAGAGTCATGTGGGCCTAGTCATACCTTGACCTGACAGTTCAGAGACACGAAGCTTGGGCTGTAGTTGTGGCTCAGTTGGTAAATGCTTGTCTGACATGCTCAAAGTCCTGGGATTGTTGTCTGGTACCACAGAAAACTAGATGTGGAGGTACACGATTGTATGCTAGCATATGGAAGGCAGAGGCAAAGGGATTAGAAGTTCAAGATCATCCTAGGTTATGTATGAGTTTGAGACCAGCCTGGACTTACTGGGGCATTTTACAAAACAAAGCAGAACAACAAAACCCCAAACCCCAAACATGCTCACCAGAGATAGGGAAATTGGTATTGCATATTTCATTAGAAAGGCAGGTTCAAAATCAATCCTAGCCTTGTGGTGGGAATGCTATTTAACACAGTGGATAGAAACATAAGGAATGTCAGTAGCATGTCCAGCCTAGGATTCCACTGTGAAACAAGAAGAATCTGAGAGCAGGGTTGACACAGGCTCCTTACTAGGAAACAAATCTTCTAAGTTTTCAGATATACTACTGAGGAAATAGAGCTGGGAGAGCCGGGTCTCTCAAACTTTCTGATCAAAAGATTGGACTATGTATTATCCTTGTTTGAGCCACCAAATGGTTGTATGGATGTGGATAGTTTTCTTGGCGTTTGCCATCTGTGAAATGGCATTGCTATTTTTTTGCCTCAGAGCCAACATTCATTAGATGTCCAGTAAATGGTTGTTATGCAAGTAAGTAAATAAATTCTGAATGAAAGGAAAAAAAACCCAAACAAACAAACACGACCCAACCAACCCCACACCAAGTGGGGGAAGCTTTAACAAATGGGCAACAGAGAAAAGGAGCATAAGAACAGTGTGCAAATTAGCAGTGTTGCCACTGTGTGTAACGGCTCGCTGTGATTTTCCCTAAATTCTTCTCATCAGCGTATGCCCATTTACGGGACATTTTTGGAGGCTGCAGACCATTCCATCTAGCCTTCCCAGAAACGCTGGGTCAGACTTCTCCATTCCTCTCTGCTTTACAGTGAGCTGGCTGAGATCAGAAACCAAAGCGACTGACTCACTATCTCCCGTGCCAGGACGTGTCTGTGGCTGACTTGGAGCCGGGGACATTTTCTTCCCATGGTGTCTTTGTTCAGCACCTCCTCAGCCACAAAGCTGTGATGGTGCTGAAGGGAGTTAATGGTGAGAGCTGCCACGTGTGACTTCAGCACTTTTCACTGCTAGAGAAAAGTGGAAAGATTGCACAAGCTTTGGGCTTACTTTACCAAATTCAAGGTTACGGATCACAGAGTGTCATGTGGGGGCTTCTTCCTTTAGGTCAGTCCAAGGAAAGCGTAGGTAGAGATGCAGGTCTAGACTTTGGTAAGTGGTTGCTAATCATCACTGAGTGGGCCACCATGGCTTTTAGCTTGATCTCAAGCTCAAGTGGAATAATACGCATTGCTCTTTTCAATACTGCATGCAGGTGTGTTTGGGTTTGGGAAAGTTTTCGAGTTTATCTCATATAAAGGAGTCTGATTTACTCTAAGGGAGAAGAGGCCTTTTCTTCTGGAGTAGAGATCTTTTTTGCATGCAAAGCAGTCGTCTTTCTGAAAAAGAATCAAATCTCTATTTCTCATTTTCCATTTACTCCTCAGCCCATCCCAGCCTGGCTTCTGTCCTCTCTCTAACACAGCCCTTGCTGTGTAACTGGGAATTCCCATGTCACTAAATCTCAAGGAGTTTTGATCTTACAACCCTTCACCCTTCATCAGTACTAGGTACTACTGACCCTCAGTTCTCTGTGGCTTTTGTGATTACACTTTATTTTTTTAGTTTTCTTTCTGTGTTCCTAGCTGTTTCCTCTCTCCTTAATGAAACCATCCATGCCCAGGAGAATATTGCAGGTCTTCAAGGATTGATTCCGTGCCCCTCTCTCCTCAGTTCTGACTTTCTTCGTATATGGCAGTATCCTTCCCTGTGCCTTCACTCTGAGTCTCAGTGAATCTTTGCTCATTAGGACAGCATGGTTCAGTGGCAGTAACAATGACGAGCCACCCTCCCATTCCTTTGCTCTAACAACACACATGCAGTCACTTCTGAGTGCCATCTCAGCAGTTCAGGATGCTGCCATTTTGTGGCTGGGCCACTGCAACATGCAGCTTTTACCACAGTACATGTCAGTAGAAGACAGCATGGAGGACCCTGCCTACTCTGATCCTCCCGCTTACAGCCTTTGGGCTAGGAATAGTCACATTCTTCTTACTTAACTGAAGAGGAAGCTGAGAAACATTGTGTGCTCTTGGGACGAGGAGAGTGAAATAGGACTTGGTGAATGCCTACCATTTCCCCCACATACACTTCTACCTTAGAGACCAAGCCTAGGTCTCTTGTCAGCACCCTAACCCCTTCAGCTGTCTACGTGAAACCCTTCTTCACCAGGAAACCTCAGAAAGAATTAATACTGGTCCAGGGATGTAACTCAGTAGTAGAACCCTTGCCTAGCACGCACAAGACTCTGCATTTGATTCCCAGCACAGCTAAAAAGAAAGGAAGACAAATAACCCCCAACTCACAGTGTCCCCAAGTAAGCTTAAAATACTCACAAAGGCTGTCCCTCTCAGAATCTTCCTTCTGCAAAAACAGCTGAGTAAATACTTATCCAGTTCTGCAACCCAAACTCCTACAGAAGAGGACTACCTATGGTGGGGTTGTTTAGTTCCTAAAAACACGGGCTGAAATTCCAATAATCAATCAACTCGTGTGTGCATGAACTCTCGGCATCGACTCCCTTTGTCACAGTCTGCCAAGTTTACCTTCTGCTGACATCTGTCTATCCTCAGGGTAGCTTCTTGTCTAACTTACCATCCCTTGTGAACAGCACAGTACAGTGCTCTTCAAACTAGTTACTGTGTCTTCCACTCTTGCCCCTGGTTGACTGTTCTCTACACTGTAGCCAGAAGAATCCGGGGAAAACCGTTTCCTGCTGAGTCCTCCCAATTTACCATTGCTTTTTACAATGGGCCAACATCCTCATCTAAACTGAATCCCACCAAGGTCAACCTTTGCCTGTTTTCCAGCCTCTTCTAGTTCTCTGTGACGGGCACCCAGAATTACAGACATCCCAGCCTTCCTTTCTCTTCTTGTTGCTCCTGCTTACCCCACAGGCCTCTGATACTTCCCAGAAGAGTCCTGCTGGCTCTTGCTTAGGTGCGGCCTCACTGTATCTTTCCCTCATAGCTCTTACCATTGGTTTAGTTGAATTCTTACTTGTTTGATTACCTAATTCATGTCTATCTTGTTTACTGGAATGTTTGCTCCATTCGGACAGGAACCATTTCTGTTTTACCCATTTTGCCCATCACCTTGCAGAGTTTGTACTATATGGGAGATGCTCGATAAATACTTGTTGGGTGAACTTCTGCTGTTCCATAAATACTAAATGCTTGCTGTGTTAGGATTCTCAAGAATAAAAATAATTCTTGCTTTCAAATTATTTCAGTGGATGATAAAAGATCATGCTCCAAGTGAGTTGAATGGTCGATGGTTATATGCACAGGCAGCAAAGATCTGGAATCTTCTGTCCTATGCAACCAACTACTAGCAACATATTACCAGCTCTCTCAAGCTTTTCTGTGATCTAAGATTAAGATTTCTTAAGAGTAGAAGTGTTCCCTGTTAGGTCCTATACATTTTCATACCTGGAATATATCTTTCACCTAAAATTCTTACGAATGTAATAGTATACTCAATATACTGAGATTTAAATAAAAATTGCTTCTAAACGTTAAGATGTAGGGCCAGTGTATTGCAGGTACATATTGCTCTCTTGCCTCCCAGGACCGCCTGGGAAACACAACTACCAGTTCTCTGCCCCTCAGCCATATCTGTTCAATAGCAAAGCAAAGCATTCATTTTCTTCCTCAG
Seq C2 exon
GTCTTTCAGAGACGTAACACTGGGCAGCTGGATTTCTTCAAGCGTTGGCGGAGTTATGTAGAAGGCTTTGGGGACCCCATGAAGGAGTTCTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002548:ENSRNOT00000003452:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(21.1=86.5)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]