BtaINT0151119 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011706 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr16:58045893-58049207:-
Coord C1 exon
chr16:58049061-58049207
Coord A exon
chr16:58046013-58049060
Coord C2 exon
chr16:58045893-58046012
Length
3048 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
ATTTTCCCATGTTGTTTCAGCCA
3' ss Score
8.35
Exon sequences
Seq C1 exon
TGGGACGACTGGACAGCTCAGTGGTGCCCAACACGGTGACAGAATTCACCATCACCAAGCTGTACCCAGCTACGGAATATGAAATCAGCCTCAACAGTGTGCGGGGCAGGGAGGAGAGTGAGCGGATCTGCACTCTTGTGCACACAG
Seq A exon
GTGGGCACGCCTCCCCATGGGGGGACAAGGTGGGACCCCAGCTGAGGACCTGGGACCAACAGAAGTTATCCTGGCTAACTCAGAGGACACTGGTTCTGGGTTGGGGATGGGAGGTTGCCCTCCAGGTTGTTCCTTGGACTCACAATTTGAAGCAGTTTGCAAAGTTCCTCCCTTAGAGCTCCTCTGTAACACTAGGAGTTTAGAGAGTCACCCTCTAAGAGTCTTACTGGTTTAGGTCAGACATTTTCATGGCATTTCCAATATGAAAAGTAACCCTCCAAAGACTCATGACAGAAGTGAATTCCAGAACAGACATGTGATTCATCCCATCTAATTTTTTAAAAGACTCTGACAGGGAAACTTTACCTTAGAGAAAAAACAAAAGGGGTCTGTTATTCCAGTAACGACCCTTAGAATCATGAAACCCCTCATTCTACATGACCAGAACCACCAAGTAACTGCATTTGCTTTTGCTTTATCATCCAGGGAGGAGGAAGGAGGTGCTTTTCTCTGGAAAAAATGATGGGCTTGAGAACAGGGCTCTGACAGCCCCTACCCTGCTCTTCTTTTCTGACTCCTCAGCCAGCTCATCATGCAGAACTAGACAGGTTTTCCACAGAAAACATGAGAGGGAACAGTGAAAGCTTTCGGTTCCAACCCCAGACGCAACTATCAGTGACAATATAGTTCCTGTATATTGAAGCATATATTCAGGAGTGCACTGACCCAGCACAAAAGAAGACATCCAGCTTGCCTCATTAAGAGAACACCTGCATTTCCTGAGGCTGTTTACTTCCCTCATGGAATGAACGGTACTTCATGAATGAGAGCAACTTGGAATTCCTCACTGCTCTTGTAGATTCGCTCACCAGCCCAGAAGGAGCATCTCTAAGGCCATGGCCAAAGAAATATTCCTTCAGAAACTCAAAAAATTATTCACCTGAGGACATCACAGGATGTTCCCATCTTCCCTACTGCCCTTCCATGCCTGTGACTACATATAGCACAGCCATATTTTTGGTTCAATCTTACCCTTCCTATCAAGATGTCTATGACCATTAAAGTATCAACACATGTTGACCTGAAGGGATGCCCAGTGAGTATAAAGAAGCCCTCCTCGTCCATTTCTCTAAGTCTTAGAAATTCACATTAAAGAAATTAGGGTTTTTCTCAGTGAGGACAATAAAATGGACTTCACGAGCCTCCAAACCCAAAAGTATAAGAGAACAACTTAGGTCAAAAACTCACTCCTTGGGTTCTTGGTCATAAGCTGCTGCTGCTAAGTTGCTTCAGTCGTGTCCGACTCTGTGCGACCCCTTTTAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAGGAGTGGTTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCACTCAGTTTTGTCTGACTCCTTGCAACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATGGGATTCTCTAGGCAAGAGTACTGGAGTGGGTTGCCATTTCCTTCTCCATTGGTCATAAGCAAGTATCTCTAAAGCATATATTCAATAATGCACCGACCCAGCTTCCCTCCTTCAAGTTCAGGCAGAGCTATTTGGGCAACTCCCAACAACTAGATTACTCACAGAAAAGTTTTATTTTGTTCTTTTGCTGTTGCTGTTGCTTTAGTGTGAGGTCTATGATTTTATAACTTTTGACAATGATTACTCCTCAAGGTCTCCTGGTAGGTCTCAGAGAGGTCAAGCTAAATGTAATCTCTTAAGATTTTTCTTCTTTATTTCTTTTTGGAAGGTTGCATTTGAAGACCTTGTTCAAGGCATAGATTATAGACACAATTCAGATGTTAAAATTGTAAATGGTTGTTTCTTTGAAATAAAGGACATAGACAAGCAATAAGAGCCTTCAGTTAGAGAAGAGGGAGAGATCAATAGTATATCTGGGTCCCCAAAATTAAATTACATGACACATAGGTTGAGCTGATACCTAAACTACTGTAATAACCTGCATTTCTAAGATAAATCCCAACTTTATGAAAGAGAGGTACAGTAAGGAAATGAGGCAGGGAACAGGAGCAGTAAAGAATCCACCTGCAGTTTAAGAGATGAGGGTTCAATCCCTGGGTCGGAAAGGTCCCTTGGAGAAGGAAATGACCACCCACTCCAATATTCTTGCCTGGAGAATCCCATGGACAGAGGAGTCTGGTGGGCTACAGTCCATAGTGTCGCAAAGAATCAGACACCACCGAAGCAACTAAATCACATGGGCGAGAGAGAATAAGAATATGGTGCTATGATGAACAAACTCTGTTCCTCAACAGGCACTCCTGGCTTTAAGCCTGGACCAAGTCCCTTGACTCTCTATGCCAAAAAAGAGCCCAGGACTCAGTACAGAGTCAGCCTTGTGAGTAGCAAAGCAAGCATTCAATGAGCAGATATGACTTTAAAGCCAACCTGAGTCCCATTCCTCATTCCACAAGTATTTACTGAGCAACGTCTAAGTTCTAGGTGCTGGGGTTACTCCCTGACTTCAGGGAACTCCCACCACACTTCCTGCAGTTCATCAACAGAGACTGTTTCACATGGCATGCCCCTTCTATCAACATTTATGCAAGTAAAAAGAGCCTGGGAAGCATATTAGCTCATCAGCTACAAAAATATAACAGTTTTGATATGTTCTTAAGTTTCTCTATCTAGGTTTAAATGTCTAAAGCACAAGAGTCATACCTTGTGCTCCCCCATAACACCCGACTGCTCTGCACAGAAGAAGTTAATGAATCGATATTTTAAAAGATCTGAGAGTAATTAAGGGAGTGCTGCGTGCTTGAGAGGAAGGAGAAATGGGAGAAGAGGAAGGGGCTGATGGAATCAGAAGGGGAGAAAGAAAAGAGGTCTTCACTCACTCCATTATTTTGTGTCACACAGCAGCCGACATGCATTCTAGGTGAAACCACAGGAGACAGTTCTCTCCTCTTCCATCCTGCAGTTCCTCTTACCTCTCCCTGGTATTTTCCCATGTTGTTTCAG
Seq C2 exon
CCATGGACAATCCTGCAGACCTGACTGCTACCAACATCACCCCAACCGAAGCCCTGCTGCAGTGGAAGGCGCCCATGAGCGAAGTAGAGAACTATGTCATTGTTCTCACCCACTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011706:ENSBTAT00000015545:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=82.0)
A:
NA
C2:
PF0004116=fn3=PU(48.1=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development