RnoINT0154083 @ rn6
Intron Retention
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77641804-77644633:+
Coord C1 exon
chr13:77641804-77641949
Coord A exon
chr13:77641950-77644513
Coord C2 exon
chr13:77644514-77644633
Length
2564 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
ATTCTCCTGTTCTTTTCCAGCCA
3' ss Score
9.95
Exon sequences
Seq C1 exon
GGGACGGCTGGACAGCTCTGTCGTGCCCAACACTGTGACAGAGTTCACAATCACCAGGCTCTATCCAGCTACTGAATATGAAATAAGCCTCAACAGTGTACGCGGCAGGGAGGAGAGTGAACGCATCTGCACCCTGGTGCACACAG
Seq A exon
GTAAACACACATGGCTCTTTTGTTGGGTGTCCAGTCAGGACATAAGCAGCGGGCTTGAAACAAACACCGGAAGCAGAGTGAAATCATTCCAGCTCATACAGCAGATACTGGCTCCAGGGCCTGAGACGACATTCCTTGGCTCCTCTGACTCACTGTCCTTCAGGACAAGTTGTGGTTTCTCTCCCTACAGACTGTTCTGTCTAATAATAGGAGCTTGGTGAGTCAGACTTGAGGAGAAGTCTTGCTGGTTCAGGTTAGGAATGTTCACGGAACTTCTACTATGAAGAATGCCCTTTCCAAGATGCATGATGGAGATAGATTCCACAGCAAACATTTGAACCATTGGATCTCTTTAAGATTGGGTGGGGGGAGAGAAACATCAGAGAAAAGTTGTTATTCCAGTTTCAGGAAACTAGGGGTAGGGTGAGATTATTCGTCATACATAACCATCCCATAGGTGTGTTGTCTTTGCTCCAAGGAAAAGACTCTAAGTTCTTCACCTGTATGAAGGCAGTAGAGGTGAGGGTGGCCCTTCTTAGCATCCCCAGAGGCTGTCAGGAACACTATATAATCCTTGTTCTCCTGTAGGCTGACTAAATGTCCTTTGTGTCCTCAAAAGGAGCTCCAGAGGAAGGGAGGTGGGGAAGAAAGATGAACTTTAATATGGGAAGTAGGAAAGAGAAATTCTTCTACCATGCCTTCTTCAGAAAAGGAGCTCTGGATAAACCCAAGGATAGGTCTCTCTTTCAGTAACTCCACTAGCCTTCCTTCTCTGGTCCTTAAGCAAGTACAGCACATAGAATTAGCAAAGATTTGCTCTAGATTCTGGTGGAAGGCACAGCCATCAGTTTCTATCGTTAACAGTGAGAACCTTCTAGTTAAACCATAGTTTCCACTACACATAGGAAAACATTTAGCCTGCCTCATTAAGAGAACACCTGGATTTCCCATCGCTGCTTAATTTCCCAAGAGATGGTGTTTTCTGAAGGAGGGAAATGTGCCTAAGAAATCCTCCTGCCTTGTAGGTCCCCTCACAAGAGCCAAAACAGCATCTTTTAACACAGTGGCAAAAACATTTTTCAGAAACATAAAAATGTACCTTTCTCAGGACAGCAGTCTCCCTCCTTCTGGATCTGCAACTGTATGTTAGATGCACTAGCTATGTTTTGCCAGTGATCATTAAAGTGGGCTTGATAAATGTTGACCAGAAGAAATGACCATTGAGCCAAGAAAGGCCTTTCCTGCCCTCCTGAAAGTTCTGCCTTATTTTCTCATTGAAAATCATAAAATGGACTTCAAGAGCACAATTTACCCCAGATAAGAGTGCTGTGACTCTGGCCAAAAGCTAACTCCTGAGCAGCAAACATCTCAAAAGCACAAACTCAGCAGCCACCAAGCGACACTGCCTTTCTGGTTAGCCAGACTGGTTCTGGGAATTTCCAGTAACTGTGCCACACTCAGAAGTGTCCTCATTAGTTGTTTAAAGCCATCACAATGATCTTAAAACTTGTAGAAATGACAACTCCTTCAAGAGATGGTACACATCTCAGAAATCACCCAACCTTATACTCTAGTAAGAGCTGAATTTAAAGACGTTTTTGAAAGTACAAATTATAAATAAAATCCAAAACATTAAATTGTAAAGGTTTTTATTTCTTATTCTTACTCTGGGAAAAGGAACAAAAGCAAAAAGAGAAGAGAAAAGAAAAGAAAAGCAGCAAATACAGCTCATTTAATCCAAGAACAGAGGTAGACCAATAGTAGGTCTTGGTTCCCAAGCATAAATTGTATGACTCACATTGAGTGAACATTTCAACTGTTTCTATTGCATCTGTTTCATAAATAAATTCCAACTTTATGAAAAGAAAACATGTAAGTAAATCCAAGAGTTACATGGGTGAGCAGAGTTATAATGTATTCATGAGCAAACTTTCTTCCCCTGACAGGCAATCTTGGCTACCCTAAGTTTGTACAACCCCTCTGGCTTTCTATGTAACCAAAAGGATGCCCAGAACACATTCCAGAGTGAAGCTTGCGGGTGGTGATGTAAGAAGTGGATACAACAACCCTGTGACCAAGTTACTGGCACAGGTCCACCATACTTCCTGAAGTTCACAGACAGAGATCTTTCCACAAAGTCACTCTTGCATGTGTGAAAGAACAAATGGGCTGAAAAGCAGGATTATCTCAGGAACTAATGAATCATAAAAATTTCCATAGCATCTTTATGCCATATAGATTGAAATGTCTAAAGCACAACAGAGTATTTTGAATATTCGACTTCCCATCGAACCCGTCAAAGAATTCTGCACACAACAATTTAATGAATCAATGTAAAAGAAGGACTTAGGGCAATTGGAAGAGAAGTGGATAAGGTAGAAAAAAGGGGAGAAAAGAAAGGTATTAATGGAGGCAGACAGGTAGAAAAGGAATCCATCTCCACTACATTATTTTATCCAGCACAGTGACAGATGTACATAACATAGGAAAATTCTGATGGTTTATGGCACTTGCACCTTGCAGTTCCTCTTTCTTTAGCCTGATATTCTCCTGTTCTTTTCCAG
Seq C2 exon
CCATGGATAGCCCCATGGATCTAATTGCTACCAACATCACGCCAACAGAAGCCCTGCTCCAGTGGAAGGCACCCATGGGTGAAGTGGAAAATTATGTCATTGTCCTCACCCACTTTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468:ENSRNOT00000003407:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.9=82.0)
A:
NA
C2:
PF0004116=fn3=PU(48.7=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]