BtaINT0152130 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010497 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]
Coordinates
chr11:106305880-106311429:-
Coord C1 exon
chr11:106311376-106311429
Coord A exon
chr11:106306096-106311375
Coord C2 exon
chr11:106305880-106306095
Length
5280 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TGCGCTGTGCTCTCCCTTAGGGC
3' ss Score
11.36
Exon sequences
Seq C1 exon
GCGGCACCCGCAGCGGCTGGCTGGCAGGCAGTTCCGGGCGCGAGGCGACCGTTG
Seq A exon
GTGAGTCCTGACGTCGGGGTCGGGGTCGCGGTGGGGTCGGGGGTCGGGGGTCGGGGTCTAGGGGCGGGGACGCGGGGTGGCGGGGCGCGCGGACCCGGGAGGCTCGGCGGGAGGCGCGGACGCCGCGGCGCGCGCGCCTGAGGGGATTTCTCGGGGCCGGAAACTGAAAGTCGGAGCGGGCCCCACTCAGGAAGGTTCGCGAACGGCGGGGCGTCCGCGGGGGCGGGCCCGGGTCCGGTGGGGCCCCCGCGCCTCGAGCCGCCCGCCAGCTGCGCCCGCGGCCCCGCTTGGGGTGCGGACGGGCTCCCAGACCTCGGGGCCGCCGCGGGCTCCTCCGCCTGCCCCGGCCCCGCTGCGCTTTGGCCTTGCCCGACGGTGACCCCGGGCCCCGGGGCGGATGCGGGGTCCAGAGCGGAGGCAGCTGTCGGGGCGGGCGGAGCCCGGGGACGCTGCTCTGCCGCGTGTGTGGAGCCTCGGGTTCGGTGGACGCCGAGCGGGCTCCCGGTGGACCCGGCGGCGGGCACAGCGGGAGCCGGGGACAGCTGCGCCCGCGCCGGCCGCCGTTCGGCGGATCAGAGTCTGGCAGGGCAGGGGGCGTGCCGGGCCTCGCGCCTGGCCCTGCGTGACTCAGGGGCCACATGTCCCCGGCGGTGGGGCCGGCGACAGCCTTTGCTGCTCAGTCTCTGGCTTTAGGTGGAGGTCCCAGCCTGCCCAGAAGTGTGGCTTGAGTTGTTTCTGTATTTTTTAACAGCTTTATTGCGGTGTAGTTTGCATATCGTAAAACTCCTCATTGCTTGAATTTCAAACTCCTAAGAAGTGCTTTTGTAAAGCCTTTTCTGGGGGGCAGGAGCCTCTTCACACATTTGGGCGTCTGACTCTCTGATTCCAGCCCCCAGCCTGGCCCAGCTCCCACCTCAGCCTGCCCTCCGGGGACCGAAGCCCCGCCCCCCTGAGGCTGCAGCCCGCGAAGGCCGCGCTGGGAGCCGAGCCCCCGTGCGCTCCGGTCCTGTTGCGGGGGACAGCTGCGTGGGCACCTCCTGAGACACCCAGGCTGCACCACGGGCCCTTCGGGCATCCCCCTGCCTGCGTCCCAGACCTCTGCTGTCCCAGGCTGCGTGGTGCCCTGTGACCCCGGTCTGTCGGCTGTACTGGTGGTGGTGGTGCCACTCAGCGTGCCCAGCACCCTGCGTGGCGCACGGCAGGATGAGGTGAAGGTCACATGTGTGCATCACTGACTCGGTCACTCTGGGGAACTGAAGGAAGGGGCTGTTTCAACAGTGCTTGTGAGCTGGGGCTGGAGCGGAGAAGTTATAGCCATCACTAGGTGCTGAGGACAGTATTTTGGGGGGGAAGAATAGACCTTTTGACTTGAGTCAGGTGTGGGCCCCTCTCAGCAGTGGGAAAGGCCAGCCTACCTGCCAGCATGGTCAGCGCACCAGTGTGGACTCGGCACAGCCTGGCAGGTCGGTTTCCATGGCAGGATGGCACACACACAGGCAAGGGGAGGAAGGTCAAGAGAAGAAAACTCAGAAAAAAGTGACCTGCAGGCCCCACAGGTCACGTGGAGCGGGGTGCACACATCCCGTCCGTCCCCGAGTCCAGGCTTGGGCTCGATGCCCCGTCACGAAGGGTGCTAGGACTGCCCTTCCGGGAGATGGGTCCAGGGGGCAGGTGTGTCACTGTTCCGTGGAGGGGCTGTGTCTCGGGAGAGGGACCGAGGCAGGCTCCACAGAAGCCTGGCTCTGAGCAGCAGGGCAGGCCCGCAGGTGGTGGAGAGGGGTTTGGGGCAGGTGTTCTTGTGGACTGGCTGTGGTTTAGGAGGTGAATGCACAGCAGTGGTGGGGGTAGGAGGTGAGTAGCAGGGGTGATGTGGTGCGGGTTCCAGGATTGGGGTGCCCTGCTTTGGAACGGGGTAGGGCATGGCTGGGCTAGTGTGTGGGGGGGGGCAGCACAGAGGAAGGGCCGGACCCAGGCATGGGAGTTGGTGACCAGCGGGAGCCTGGGAAGCAGGGAGGGCAGTCATAACCCCCTGCACATGCCCGGGCCACTCCTCCCTGCCTCTAGGCCCGTGATGCCCTTGTGCCAAGGGAGCAGGTGAGGGCTCTCTGGGACTCCGAGAGCCTGCTTGGGCAGCCTGGGGGTCTGAGGGAGGAGCCGGGTCCCCGTCACGTGTTTAAGGGCCTGGGGCGGCCCTGCGGTACGTCACATCGCGGTGGACGGTGGCCTGGCCCAGCGGTAGCGTTGTGGTCAGGTTCTGGATGCTGGTTTTTTTGGGGGGGGCAGGGATTGTTGGATCTTCATTTCTGCAAGTGGGCTTTCTCAGTCTGAACATTGCTGGACTCATGGGGGCAGGATGTGCCAGCTTGGTCAGTGGACGCCAAGCGGGCTCCCGGTGGACCTGGCGGTGGGCTTAGCGGGAGCCGGGGACAGCTGCGCCCGTGACGGCTGCTGCTTGACCAGAGTCTGGCAGGGCAGGGGGCTTGACAGCACGAGTAGCTGCGAGCGGGTGCTGCGAGAAGGGCGGGCGCAGCATGTCCTCCTGCGCTCTCGTGTCAGCAGTTGCTGGGTGCTGAGTTGGTACCCGATCACGTGGCATCGCGTCGAGCTTGAAGGAGGTGGACGCCGTGTGAACGGTGCTGCTCACTGGGGCTCTGGTCCTGGGGCCGCGCTGCGCACCACACGCAGATGCCAGGCCTTGACTGTGGCCGCGGGAGGTCTGCTGTGCAGGCAGCTCAGCCCTGGGGGGTGGGAGCCCAAGCACTGCAAGCAGCAGGGGCGGCTGTCGGTGGGAGCGTGGGTTTGGGGGAGTTCAGTCCCTGCATTGGGGCATCCCAGAGGGAGGCTTTTGAGTTGAACCCGTGTGTCTGCTGGCGACAGGTGGCCCCCCAGCAGCCGCCTGTTCGACTCTTGATGTGACGCTGGTTTGGGCAGCAGCTCAGCCTTCTGAGATAACTCACTGACACCCATGCAGCGGGCGAGGACGGTGGGGCCCAGCTGCCCAGTGGCCTCGGGCTCAGCCGGGGTCTGGGCGATCTCCCGCAGGGATGGCCCTTTCCACGGGTCCTCCCGCTCTGCACGCAGGTGGGACCTGGGCTTGCGAAGGAGGCCTGCAGTGAAGGAGATGGCAAGGAGCAGTAGGTGCCAGGCGCCTCCACCCTCCTGGGGGCTGCAGCCCACCTGGGGACTTCTTTTGTGTTAAAGCCCACTTCTAAGGTTGCCCTCCATTGTTAGCGCAATGAAGCAGGGTTGTTCTGGATGAAGGTGCGTGAGTGTGCCGTAATTAGGGCTTTCACCATCTTTTTTGGATTCTCTGGGAATACAAGCTCCGTCTCTTTATTTTTAAAATGAAATATTTGTACAGAATCCGTGTCTCCTGCATTGACAGGCCGGTTCTTCACCACTGAGCCACCAGGGAAGCCCTCCGTTTCTCGATGGACACCAACCGGTGTCCTGGCCGCCTGGAGTCAGCACAGGCCCCTCACATTCAGGGCTTGGCCCCACAGGGCTGCCCCCACCCCACCTCCGATGGCAGTGGGTGGGCGAGGCCTCCTGTACTTCAGACCCACTGACTGTAAATTGAGGGTTTTCATGACCCCTCCTTGGGGTCAATGATTTGCTAACAGAGCTCGGAAAACTCAGAGAATCTCAAGTGTCGGCCTGCTGGGAGAGACACCAAGGGCCAGGTACAGGGGTGGGGAGGGCAGCCAGACCCCCTCCGTGCATTTCCCGTGTCCAACTAGAAGCTCTCCAAACTCCCTGGTTTAGAGTTTTCTAGAGGGCTCCACTGTGAAGGTGCGCTTGATGAATCATCAGTAAGTCACCTCTAGTTCCCCTCACCCCCAGGAGATGGGGGTGGTGGTAGAGGGGCCATCCGGCCCCATCGCTCAGGAAGCCCTGGGGGGTCTGGGTGCTGCCGGCAGGGAGAAGCCCCCGCGCCTGCTGCCTCAGAATCGCCCCAGGGCAGCCGCCCCCCAGCTCCTTCGTCTCCTGTTAGCTTTGCCTGTCCTCCAAGTCCCTGTAACTGGAGTTATTCTATAAGTAATTTTTTTTGTCTAGTAGAAATGCCATCTAGCAGAATGTCACTCTGTTGTGTAGAGTCAGTGTGTTCCCATCTGGAGCGTGTTTGGGGTGTGCGTTAAGTGTGAGGCCAGGGCTGGGCACGCGGAGCACTCCTCGCTTTTCACCACCTTGCCCGAGAAGTGAGGACTTGGAAAATAAACTGCAGGCTCGGAAGGCCCAGGAAGGGTTTGGTTCCTGGTTGGAGGTTCCTGACACTTGACCCCTCACATCTGTCACCCTGAGTACAAAGGTGGCCGGCCACCCGCCTGCAGTGCGGGAGGGTGCGGTGCAGCCCGGAGGGGCCGAAGGGGCCGCAGGTGTCTGGGCGGGCGGCTGCAGCAGCGTGCGGTTCGGGTGGGGTTTGGGCACGAGTTTAGAGCCTCTGTGGTGTCCCTGTTATGATCCTTTTTTTTTTGTTAGTTCTACCAGTTTATGGCTACCCACCCATGTCCCCCCACCCTCACGCACATGTGCTCAGTCAGGGGACCCATGGGCTGCAGCCCGCCAAGCTCCTCCGTGGATTTTTCCAGGCAAGAATACTGGAGTGGATTGCCATTTCCTCTTCACTCCGTTAGGATTAAGAGTTAAAGTTCATCTATAGATGTGATGGAGTGAAACATTTAAGGCTTTAAGCACTGAGACCTCCCAGGGCGCCCTCGCTCTGGGCCAGGGAGCTGTGACTGCTGAGGGGGACGTCGAGGCCTGCAATGTATTGGGGCTTTTTCCCTCTTTATTGCTCAAAAAAGAGACCGTTGTGTGGTTCTTCAGCGTCCAACAGGAGTAACAGTCTGTGGATTAATGGAATGGGCTCAGCGTGCCACAGGAGGTGTGGCCAGCCAGCCGCATTTGGGTGGAAAGCTGCCGAGGGAGACCGGCTGTCTTGGGGCTGGGGTCAGCGCGGCGGCACCTGGCTGCCCGGGGGCCCCCTGCAGGCGACTGTGAACGCTGTCCAGTGTTTCCCGAGCACTCCACGATCGCCACCTCGAGGAGATGCCAGCCCCAAGAGTTGAGGGCTGCGGTCTCCGTTGGACGTGGGCTGGGCCGGCTGGCCTGGGAGAGGGGCCACCCCGCAGTGGGGGGTGCCCGCTGCCTCAGCCTCGACCCCCGCGTGTACGAGACCAGCGTCCCGCCTCTCAGGCTGGACCCCCACAGCCCAGCGGCCTCGGCCCCTGGTGGCCGCGCGTCCCCGGACCCACCCTGATGCGCTGTGCTCTCCCTTAG
Seq C2 exon
GGCGTGGGCTTGGTGGGCTGCGGCGCTCATGGCTGCAGCCAGCGTGACCCCTCCCGGCTCCCTGGACCTACTGCAGCCCGGCTTCTCCAAGACTCTCCTGGGGACCAAGCTAGAGGACAAGTACCTGTGCTCGGCCTGCAAGAACGTGCTGCGCAGACCCTTCCAGGCTCAGTGTGGCCATCGCTACTGCTCCTTCTGCCTGAGCAGCATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010497:ENSBTAT00000013869:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(74.4=40.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development