MmuINT0164476 @ mm10
Intron Retention
Gene
ENSMUSG00000026942 | Traf2
Description
TNF receptor-associated factor 2 [Source:MGI Symbol;Acc:MGI:101835]
Coordinates
chr2:25538866-25546940:-
Coord C1 exon
chr2:25546862-25546940
Coord A exon
chr2:25539085-25546861
Coord C2 exon
chr2:25538866-25539084
Length
7777 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGGTCTGTGTTTTTTTTTAGGGC
3' ss Score
11.7
Exon sequences
Seq C1 exon
GTCCGTCAGACGGGGCGGGCCGCGGCAGCGGGGGTGTTTCCCGGCGAGCGCTGAGTTCCGGGCGCGCGAAGACCGTTGG
Seq A exon
GTGAGGCGGCGCGGATCTAAGCGGGGGGTCTACTCTCAGCGGCGGCCGGGCTGGGGTCAGGCGCGGGGTGGGAGTGGCGGTTGGGGGTCAGATGCGGGGCCGCCGCTGTCTGGGTGAGGTGGGTGGGTAGACTTTTCGGAGCCGCGGAGCCGGAAACTGAAAGTCGCGGGAGGGGGGCCGGAAAAGTTCGCGACGTCCGCAGCGGTGCTTGGCTGCGCGCCTACCGCGGTGGCTCGGGGTTACAGCAGTACGGTCCCTGCCCCAGATCTCGGTCCGGCATCGCGCCCGAGGGACCCACGAGCCCCACTTGCCCTTACTGGCCTTGAGCGAATACCTGGTCTCCCAGGCCACTTTTACCGCTCACCTCCCACCCACTTATGCTTTTTGGATGGGGCAGTCAAATTTGGTCTGCCAAATTTACGTCGCCTTTTCTGACACCCGGCTACACAAATCACGGACACCACCTCCCCCATAAGGCCTCTTCCCTGTTGGTGGTTTACCTTCCCTGTCCTCCTTTATTTTTTCAGATCTCACCTTTCTGCCCCTCAGAACCTCTGTTTCTCTGGAAACTATCTTGCTTTTTGTAAAGTAGTCTGGCCTCGAACTACTGAGTGCTGGGATTAAAGGGCCTGCGCCACCACCGCCCTGGAAACTATGTTGATGGGATAGATGCATATGTGTCAGGGTGTGGAGACTGATCCCAGGGCCCTTAACCTCCTGACGCCTGCCTAATGGAGGTTGGACCTAGTGTATATTCCACATGATGGACTTGAAGCCCTGAGTAGGTGGAAAGGACATGAGATTGATTAGAACTCACAGACGTACTCCCAGCGGGCCCCAAAATCGGAGAAACAAACTTTCAGCTCCGTGGACACAATGCAATGTCATCATTGTCTTGTGTGCAACTCACTAGCTTGGCTACCAGTCCCCCAGAGAAGTCACAGTTGACCTTGCCACCACGGCCCCTTCCTGCCTGCGTAACTGACTGAGAAAGGTGGTATTTAGTGACCCAAAGTTAACTGTTATCAGGTGGAGACCCCAAGCAATCTCAAATTGATGTTTAAGTCTTAAAAATTAACTTTATTGCTGAATACTTAATGATGGATTTATAAATACTTGAGTTTTAAAAGCTGAAGGAAGGGTTGTTTTTTATCAAGCCTTGTGTGTACATCTGGAAGGCTGAGTGCTGTCAGCAGTTGTGTCTCTGGTCTGAACTGGTGGCTCCTTGCCTGCCTAGCAGGTCTGTGAGGTGTTTACCTGTTGGCTGTTTTTTTCCCTGGGACCCTCTAGTCCGTACCTAAACTGACTATTCTCTGACAATACAGGCTGCCTGGAACCCTGTTACTCTTCTCCTGTTTGCCAGTCACCATGGGCTCCTCAGGAGATTCTCCACTATGTCCACACACCTGAGCAAGGGCCATGTGCATTCATAACCTAGTCTCACTGGCTCCTGGGCTGCAGCACACTGAGCACTTCCAGTCAGAGCTCTCTGGGAATCCCTGCTGTGGTTCCTCCTGCACCCATGAAGTAGCAGCAGGCTGGACAGCACAGAGGACATGGCAGCAGCCAACTTGGAGAAAACCTTCTTCCAAGAAGGAGATGCTTCCTGCCTCTCCTCTCACTACTGTTTTCTGAGAGTTGGTTTGGGGTTTCCTTCTTGACAGTGGGGTGTCAGGCCTCCACTTCCCATGTGGTTGCTACATGGATTGTCAGTGTAGCTTGGCAGGTGGGTTTCATGGGGTGGGAGCTTTTACAGGCATGGACAGGATGACCTGGAGAAGAAAGAAAAATCTAGAAAGAGTTGTCCATAGATCCTCCAGATTATGCCAAGGATGGGCTGTGCGGCTTCCAGGCTTATGCTGAACATCTGTCCCTGTGTACTGGCCTTGCCCCCTTTACATAGAGGGTTGGAGACAGCTTGGATGCCACACTGGACATCCATCTCATAATTGTAGTGTGCTCGCCCTGTTCATGTCCATAGAGGAGGAGACACGGTGGCTGCTGCATCTAGGATCTGGGACCCAGGTGGGCAGTGGAGTTAGTATTTGGGGCAGGTTGTAATTTTGGTGGATGGTTCAGCTAAAGAAAGTCAAGGATTTGGAACCTGGACATAGTCTTAGGGTTGCCGTGCTCAATTAGAGCACAGGGCATGGGTTGTGAGAGGAGGTGAGTTTGTGACAGGCTGGACAGTTGTGTTGCACAAACAGATTCTGTGCTGTGTACCTACTATCACTTTATGGCATTACCAGCTGGGCCATCTAGTTATTGATGTGGCTGCAGCCGTCAGTAAAGGATCCAGGAGGGGAGAGCTATAGAAGCTGGCATTCCTCCTTCCTCTCTCTAGCTCTGCACTCCTTGTCTTCTGACGGCCAGTACCTGGGCTTATGTTGGGCATGGTACAAACCTGTAAGAACTGATGGGAACCAGGGATAGGGAAGACAGGTGGAGTTGGGCAGCTGTAGCTTTAATGACCAGAGCTGGGAAGCCATTGAGGTTCTGAGCTGAGTAGGCCCAGACTTCATGCTGTGATAAAGGTCCCTCTGACTCAGGAGACCACAGTAGCAGCAAAGAAGCTATGCAGTCAGAGCTGGAGCTGTCCGTTCATTATGTTTGAGTGTTGAGGTTCTAACAGAGCCCTGGTGCTACACACAAACACACACACACACACACACACACACAGAGGGAGAGGGAGAGATTCCAAATCTGTTATTGCTAGGCATGTGAGATTGAAGCAGAAGAGATTGCTAAGGGGCATATCTGGGAGGATAGACATGGAGTTTAAAGCCCTACTGTGTGTTGTGGCCTTTTTCTTTTTTTTATTTATTTATTTTCATTTTATGTATATGAGTACACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTGAATTTTTAGGACCTCTGCTCACTCAGGTCAATTCTACTCGCTCAGTCCCTGCTCACTCCAGCCCAAAGATTTATTTTATTATTTTTGTTTTTTTGTTTTTTTTGGCTAAGGACTGCTTTATTGGTGGCAGTTAATAGACATCAATAAATATTAATCCCCAAAGAAGAGCTCAGTTACTCATCAGGTTCCTGGTTCATCGAGCATTGATGAAACTGAACCATGTGAAGACTGGGATGACGATGTCAGTTCTGCTTCTTGGGAAATGCAGCCGTAGCTAACAGATAGATGGCATAGGCTGTGCCACCAACTAACTGTCAGAGCCACTGTGGCTCTGTAGAGGAGGGCATCAGATGGACTGGCATCCCATTGTCCTCCTGAAACAGCTTTTGTTTCTCTGGAACTTAGTTTTCACAATGCCTTCGTGAAGTGGTGCTGATGGTCCTCTGGGCAATCTGACGAACGGCCAGCAGACTCCACAACATCTTGGCCCGGTTGTTGCCACCAACCGCGACTACTGAACGCCAAAAATCCTATTTTTTTATTATTATACATAAGTACACTGTAGCTGTCTTCAGACACCCCAGAAAGAGGGCATCAGATCTCATTAGTTGTGAGCCACCGTGTGGTTGCTGGGATTTGAACTCGGGACCTTCAGAAGAGCAGTCAGTGCTCTTACCCACTGAGCCATCTTGCCAGCCCTGTGGCCTTTTTAAAATTAAGGTTTACTGAAAGTTATTTTTTATATTTTGTGTTTGTTTGCATGATCACCGCATGAGTGCAGTGTCTGTAGAGGCTACATGAGGGCATTGGGTTCCCCTGAAACTGGAGTTAAATAGGTGGATTGTTACCTACCATTGTGAGTGCTGGGAACCAAATCCTGGTCATCTGGAAGAGCAGGGAGCACTCTTAGCTGCTGAGCCATCTCTCCAGCCCTACATTTTCTGTTAATTAAATTAATTTGCTCTTTGACAGTTGTGTATATAAATGCCTTCCGATTACTGGTGCCCACCCCCCACAGGTCAGTGTTCCATATAAAACCTACCCTGCATTCAAGTCTTGCTAGAGTTCTTTTGTGCCAGCTGGGGGCTTTGGCATAGGGTCTCACTGAGCTGCTCCGGACACCTGTAAGCTCCTTGGCTCTAGCGAATTTCATCTCACAAAGCAGATATAAATGTGATGCCACCACAGAGAAAGGGACAGAGTCAGGTCTGCCCTCCTAACCAGGGCTAGTCACCCTCTTGGGTGCTTAGAGCAGATGTAAGTTATAGATATTCTCTGTGAGCTAGGATACAGGATTATGATTGTCTGTGGGGATGTGCCAGCTGTGTCCTGCAGGTGACAGACAATACAGACTTGTCTTGGTGCTGTCACCACTGTGCAGGTCCCCTTCGGGAATCTCAGCCTTAGACAGGGATGAGTGCCTTTGTAAAGGGTACCTCCATGAGTGTGTAGGGGTCACTGTGCTGCTGTTGAGTGGTTCCCAGGGGTGGACAGGGAGAGAGGACAAGCCGTTCATGGTGCAGAAGTCGTGTGTACTTGTCTTAGATCTCAAGGCTTTCTGCTTGTGCTCGCCAGTAAGTTCCCCCATTTTCGGGGAACAGATGAATTTTCTTCTTTGAGACACACAGAACAGTTTCATGTGAGCTCTGCAGGCTGCTAGGCTCTGTTCAGGTTAGGACTCTGGCTTCTGGACTCACCCTCAGCCAAAGGTTGGTTCATAGAAACCAGCACGAAAGGCAGAAACAAGACACTAGTTCTGAGCCTCATGAAAAACATGTGGTGAATGAAAAGAAGGTGGCAGGTGACAGCTGTCCCCAGTGCTTTGTGAATGGTGTGGGATTGTTTTAATATGTGTCATCAGAATCAAAGTACGCTTGAAGGAGTAGTGAGCTACTTGTAAGAGTTGGCTTTATGATGAGCATCGCTTTGAAAGGCCATGCTGCTGTTTATTCAGTCATGGCCTGTTGGTGCTTGGGTCTCTGAGCACCTGAGAAGGAGGGCCTAGGGCTGGAGTGTTTGAGAGCACAAGGAAGCAGCGGGGTCAAGGTCAGGCGTCAGGGCACAGTCAGTGTAGCAGTTGTGTAGTTGGTGTTGTTCTGAGTGTGGCTCGACGCTGTGGGCAGTGATGTTTAGGTGTGCAGAACAGAGGGCAGGGTGTCCGTCAGAGGAGGCAGGATTGCAAGGGTTGGGCACAGAGCAGACTCAGAACCTGTGGGCTTGATAGGTCCCTAGGGTGTGGGGAATTGCAGGCTGGTATCCAGTTGAGCTGAGGTCTGAACCCCGATGGTCATAATTCACCTACATGACATGGTAGGCGTTCCCTCATGCTCCTGGGACTCTAGCCCCTGCCTAAGGTACCACCTCCCACAGCCCCACAAGAGAAGCATGGTCAGTAGTCACATAAGCAATGGCCCAAGCTTCTGACCTTCAGGCTAAACTCCTCCCCAGTTACCTAGCAACAGTGAAGACCATTAAAAGGGCTGTTCAGCCCCCACCTTGCTCTCTTACCTATTCCTTTGTCCTTTTACCTCTCACTTCTCTCTCCTCTTCCCTTTCTGTCTTCTTCTTTCCTCTACTCTCTTTTTTTTCTCTCTCTAGCCTTCTCTGTCTGTCTGTCTGTCTCCCCCCCCCCCTTTTTCTACCTTCTCTCTTTCTCCATGCATTTCTATAATAAAGCTCTTAAACCATAGAGAGTCTCTGCTCCATCAAGACCCACTGCGCACTCTGGTCAGTGTTGGGAACTTCTTCCCCTATTCCCTCTCTCCTACAACCCTGGGGCTTTAGCAAGGTAGCTCCAGGGTCCCCGGTCAGGGGCTGCCCCTTTTCCATCCCATGTTGCATGGGTCAGGCATGCTCACCTGGGGCCAAGTGGAAAAGTGTCCCGCAGCTCTGCCTGCATCTACCTGCCCAGAGCACAGGAACTCTGGCCGGACGTTAGGCCCCTTTTCCTCCCCACTTTTCCCCAGGGACCCCCTTTATTTTTGTTCCCAACACTAGGGCAGGGAGGAGGGAGGTCCAGCCTTGGCTGACTTGCCAGTCACTCATTTTTGCAGGCCAGTAGACCTAGAGCCAAGTGACTCACTGTGGCAGCAGACCCACAGTCTGATTTCCCACACCGTAGCTTTCCACCAGTGGTTTGCTGGACAAGGCCTTGTTCATGTCAGGGTGTGAATGCCCCAAGGCTTTGAGGGACATGAAGACAGCAGGGCAGCAGGTCAGTGGGGCCAACAAGGTTTGAAGGACAGCAAGACCCTGTCCAGCAGTTGTACAGGCGTGAGGTGGCCATCGCTGCTGTTGTCCTAGAGCCGGGTGATTGCCTCTGGCACTAAGTGTGGGAATGGTTCTGGAAGGTGATTCATTAACTGAATGAAATGTGACTGGGGTTTTGCTGGGAAGAGGACTCTGGGCTGCTGCTGCTCATGACCTCCCTGCCTTCAGCACACCTCAGATACCAGACACTTTACAATCTATATCTCAGGACATATAACCCACCTCTTCCTTAAGCTCAGCTGAGACTGAACCCCTACTTCAGAGCTAAGACCTTGGGAGGTCGTGGCCATCCTCCCAACCCACATCCCCAGATGCCTCCTTGTCTCATAGGGACTAGCCTGCTCTTTTGTGAGAACCAGCTGTATTCCCACACCCTTCAAAGGCTCTAAGGAACCCTGGTTGGCAGAAAGGATGGTTAGCAGCTGCCCCCAGCCTTTACACTGTCTTGGAGATGGAAATACAGCAAGGAGGTCGTCACTGGGAAATGGTGGTCCCCAGATGTGAGAAGCTATTGGAAGACTTAGTGTACCATGTTGCTACCTTAGGTAGTCCAGGACACTTGCCTCAGCCCGAGTAGACTTCTTCCCAGAGAGCTACCTGAGAAAATGGGTGAGAGGAAAGCCCACTTGCTGTGTAATTACTCGGAGCTGAGAGGGAGCCTAGTAGAGGCTGCTGTGCTAGAGGATAAGGGAGGAACGTGGCATTGAAGAGCCAAAGTGGATAGAAAAGGAAAGCGCGATGGACCAGGCTGAGGTGGCTCTTCTGGCATGGCGGGGGATGTTTAAAGGATGTAGGAAGAATGGGCTCCAGTTGGCTTTGAGCAAAGTGTCTTGGAGAAGATGACAAGTGCTAGATCTAGTCTGCCGGGAAGAGGGGCTTGCAGGCTGTGTGTGTGGAGAACTGATGCTGAAGAGGAAGCACAGTGGTCAGTGTCTTGGTCTGGTTGTGTCTTGTGCCCAGGTAAGGCCACCACCAGGGTGTTGTCTAGGACCTGCCCTGCTGGCCTGTGGTAAGCTTCAGTCGCCGTCTCCATGTTTACTGTAGAGACGTGAGTGTGGGGTGGAAGACGCTGACTGTTAGTGTCAGCGGGAAGTACTTGCTCCAGCCAGGATTGGTACCAGCAGGTAGGAAGCTCATTAATTAGTTATTGTGGGAGCCACCAGATCTGTCACCCTGATTGACATCTCTTCCCACATTTGTAGCAGGGGATTTAATTGCCTTATCTCAGAAGCTTTCCAGAACTTTAAAATCCTGTTTTTAGATCCTTTTACAAGGTCAGTGTAGTATAATGACCCAGGTACCTCACCAGGTTGCCTCCTGGTAGATTCCTCTCCTCTCTTTCTCCCTCTAGAGCAGTGGTTCTCAACCTGTGGGTCAAGACCCTTTTGGAGGGTGAAACAATACTTTCACAGGGGTTGCCCAAGACCATCAGAAAATAAGTATTTACATTACACAACAGCAGCAAAACTACAGTTAGGAAGTAGCAATGAAAATAATTGTGTGGTTGGAGGTCACCACAGCATAAGGGACAGTAAGAAAGGTTGAGAACACTGCTCTAGAGGATTGTTCTGAATTGAGGTGTGATATGGTCTGTGTTTTTTTTTAG
Seq C2 exon
GGCTTTGTGGTGTGTGGGGGTTGTAACTCACATGGCTGCAGCCAGTGTGACTTCCCCTGGCTCCCTAGAACTGCTACAGCCTGGCTTCTCCAAGACCCTCCTGGGGACCAGGTTAGAAGCCAAGTACCTCTGTTCAGCCTGCAAAAACATCCTGCGGAGGCCTTTCCAGGCCCAGTGTGGGCACCGCTACTGCTCCTTCTGCCTGACCAGCATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026942:ENSMUST00000028311:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(74.4=46.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types