HsaINT0171677 @ hg19
Intron Retention
Gene
ENSG00000127191 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:12032]
Coordinates
chr9:139780965-139793380:+
Coord C1 exon
chr9:139780965-139780993
Coord A exon
chr9:139780994-139793164
Coord C2 exon
chr9:139793165-139793380
Length
12171 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGCTGTGTGTTCTTCCTTAGGGC
3' ss Score
11.8
Exon sequences
Seq C1 exon
CTTAGTTCCGGGCGCGCTGCGACCGTTGG
Seq A exon
GTGAGGCGAGCGCGGGGTCGGGTGCGGGGTCGGGCGCGGGCGCGGGGTCGGGTGCGGGGTCGGGCGCGGGGTCGGGCGCAGGCGCGGGCACCTCTCAGGGAGACTCCGGGCCGGAGCGGGAGCGGGGGCGGGAGAGGCCGCGGGGCGGGGGCGGGGCCAGCCCGAGGGGATTTCTCTGAGCCGCTGGGCCGGAAACCAAGTCCGAGCGTGGCTGGCGCGGGAAAGTTCGGGAACGCGCGCGGCCGTGCTCGGAGCAGCGCCAGGGCACGGTCCGGGGTTTTGCGCGGGGTCGCGGCTCCCAGTACCGCCTGAGGCCCGTGGGCGGCCCACCCGGCCCTGCCCCGTCCCGGGTCCGTCGCTCCCCCGCACCCTGTCGCCCCTCCACGCTCAGCTGTGGGCCCCTCGTGTCCCCGAAGCCCCGCACCCTCAGCCGGCTGCGTGCTCGGGAGGGTCAGGGGCGCCTCCGACCCCTGAGTTTGCCAGCGCCCCCCAGCCAGGGGTCGGGGAAGACCAGTGAGGCTGGGGGCGGAGCCGACTCTGCTGCCTTCCTGCCCAGTGGCTGGGGAGACCCAGGCTGAGCCTGGGTGAAAAGTCCCTCTGGCTGCTGGGAGGGTCGGGGGCAGCAAGGAGCCAGTGCGGGGATGGGCTGCGGTGGACCGGGCCGGGATCGGGGCCGGGGCCTGGTCCTGGCAGTAGCAGGGGATGTTTGTGGAAGGTAGAGCCGAGAAAAAGAGGAGTTGCAATGTCTGCAAGAATCTGGCGTGAGCAGCTGAAGGCTGGTGCTTCCTAGGCCAAGATGAAGGAGTCACAGCGCCCATGGCCTCTCGGGAGGCGGCCAGATGGGCAGCCTGGGGTCAGGGGAACGGTCAGGGCCAGAGCTGGGTATTTTGGAGTTGTCATTTTGAGGCCCCGAGGGCTGAGGGTCAGTGCAGAAGAGCACCAAGCCTCCACTCGGTGTAGGGCCGACAGGGGGTGGGGTGTCTGGCAGCCGGTGAAGACGGGGCTCGGAGGAGGAGGGAGTCTGGTCTGGGTCAAGTCAAGGGAAACTAGGACTGAGAACGGACCCTGCTCTGTGGCCACATGATTTTGAAGGGACGGAATTACTGCCCTGTAACTCAGTCTCTCTCCCTGTTAATAGCCCTAGTTTTTAATAAGAGGAACTGAATGTATTAATGGGTGGACACTTGTAAGGTTCAAGATCTCCTCTTCTACCACGCTTGCTTCTGATACTTTTGTATAAACAGTTGTTAAGAGTTTAGGTTGTTATCAAGCTTCTATTTGGTATTATTTTGAGCCTGAAAAAGATGGGGTTACATATAAAATTGTAATTTTATTTATTTATTTTTTGAGATAGTTTTGGTCTTGTTGCCCAGGCTGGAGTGCAGTGGCTCGATCTCGGCTCACTGCAGCCTCCGCCTCCTGGGTTCAAGCGATTTTTCTGCCTCAGCCTCCCGAGCAGCTGGGATTACAGGCGTGCACCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGATAGGGTTTCATCATGTTGGCCAGGCTGGTTTCAAACTCTTGACCTTAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACCGCGCCCGGCCATGAAATTACAGTTTTAAAGTTAACTTCTAGTATTTGGAGGGCCTCATATTCATGGCTGCATGCAGATCAGTGTTCCTGAATATTACTCAGATGAGCTTTTATAGAAGTGGGTTAGAATCAGGTGCCATTGACGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAGAATCGGGTGCCACCCAGTGAACTCTTACGTGGAGTCCAGTATTGTATGAAGCAGTTGTGTGCTGTTGGTGGAGACATGAATTGAGGTTTGAATCTCCAGCATTTGGGGCATCTTGGAGTCTGCTTGTGAGAAGGGCGAGGCCTGGGTTGAACCCAAGCGTTTGCGGCGACTAGGTGACCCCTGCAGCGGCCAGGTTGCACCCATATCTGATTTGATGTCATGGTTTGGGCAGTGTTTGACTTGTGTAACAATACAGCTTGTCCTTTTGAGAGTCACCGATGCCACCAAACCATGTTCACACACCAGAGTCAGGATGCCAGGTCTCAGCTGCCTGATGACTCCAGCTTAGTGAAGGCCTCTGATTTCTTGTGGGGGTGTCCCATTGTGAAGGGAACACACAGCTCGGCCCTACCAGCAACAAGGGTGCCAGATGCCCCCACTCTCCTGTGGAGGGGAGTCTCGCTCTGTCACCCGGCTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCACGCTATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGACTACAGGCACCCGCCACCACGCCCAGCTAATTTTTTGTATTTTTAATGGAGACGGGGTTTCACCATGTTAGCCAGGGTGGTCTCGATCTGATCTCGTGATCCGCCCACCTCGGCCTCCCAGAGTGCTGGGATTACAGGTGTGAGCCACCACTGAGGGGCTTTTTTACGTTAAAACTTGTTTGTTTGTTTTTCTTTTTTTGTTTGTGTGGTTTTTTCTGTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCCCCCGGTGTGAGCCACCACGCCTGGCCTTTTTTTTTCTTTTTTTGAGACAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCGCTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCATCCTCCAGAGTAGGTGGGATTACAGGCACCCACCATAATGCCCGGCTAATTTTTGTGTTTTTAATAGAGACAGGGTTTCTCCACTTTGGTGAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCACTCCCAAAGTGCTGGGATTACAGGTATGAGCCACCTTGCCCGGCCTTAAAACCTGTTTTTGACATTTCTTTGCCATTTTAACTTTTTTGTTATTTTATTTTTATACCTGAGGTCTTGTTATGTTTCCCAGGCTGGTCTCGAACTCCTGGCCTGAAGTGATCCTCCAACCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCAAGCCACTGTGTCAGTTGGTCACCGCATGTGTGAGAGTTCCCCCCACACTTATTCAGTCGGTCACCACTTGTGTGAGAGTCGCCCCTGCATGCTCATTCAGTCGGTCACTACATTTGTGACAGTCATCCCCGCATGCTCATTCAGTCGGTCACCGCATGTGTGATAATCACCCCCGCATGCTTGTTCAGCTCGTCACCGCGTGTGTGAGAGTCCCCACCGCACGCTCGTTCAGCCGGTCACCGCGTGTGTGAGAGTCCCCACCGCACGCTCGTTCAGCCGGTCACCGCGTGTGTGAGTCCCCCCCGCACGCTCGTTCAGCCGGTCACCGCGTGTGTGAGTCCCCACCGCACGCTTGTTCAGCCGGTCACCGCGTGTGAGTCCCCACTGCACGCTCGTTCAGCCGGTCACCGTGTGTGTGAGAGTCCCCACCGCACGCTCGTTCAGTCGGTCACCGCATGTGTGAGAGTCCCCACCACACGCTCGTTCAGCTGGTCACCACGGGGGTGGCACTTTTGTTTTTAGCTGACTTAGCTGATAGAATTGGGAGTTTTAGAGTAAAACTGATCTGGAAGCCTGAAAAAACCAGCAGCACATTGTTCGTTTCCAGGTTGAATCGCTCCTAGCTGACCCCTCACGTCTCTTATGATACGTACAGAAAGCAAGAGCAGCCCATGCCGTCCGGCCGCGCACCAGGTCTCAGTCTGTGTGTCTGGTTCAGGTGACCATGGTGTTCAGTTCAGTTCCTCCTGCCTCGTGTGTAGGCCACTGAGAGCTCCCTAGTCTAAGCCGGAGGAGGTTCTGGTAAGTGCTAGGCACAGTGGAAGTCGGATTCCAACATGTGCGCAAATTGGGGCACTGTCAGAAGTGTGCTAAAATCTTGGTGTAGCACTTTTGAGCCTTCGTGGTGGTTTTCATTAGTTCTTAAAATGTATTTATGAATGAGATTCAAATAAAATGTTTAAGGAATCTCTAAGCACAAAGAACCCCAGAGTGTAGTGTGGGCATCAGTGGGACCTCAGGGTCCCCTGACCGGGCTGCCTGCCGTGTCCTGGCTGTCTGGGGTTGTGTTTTCATTTGGAAACAGGAATAATGATCCCCGACCTTCCAGCCGTGTCAGGATGTCACGATGGCCACGTGAGGCCGTGTCTGTGAGAAGCGTCTGCCGGTGGTGGAGGACGTGCACTTTGTTGTGAACCTCGGCTCACTGCAGCCTCCTCCTCCCCAGGCTCAGGTGATCCTCCCACCTCAGCCTCCTGAGTGGCTGGGACCACAGATGCGAGATCCTCCCACCTCGGCCTCCTGAGTAGCTGGGACCACAGATGCATGCCATCACACTTGGCCATTTTTTGTATTTTTAGATTTGTTTTTTTATGTGTGTTTTGTTTTTGAGACAGATGGTTGCTCTTGCTCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCCGCCTCTCAGGTTTGAGCGATTCTTCTGCCTCAGCCTCTGGAGTAGCTGGGCTTACAGGCTTGCACCACCATGCCTGGCTAATTTTTTGTATTTTTAGTGGAGACGGGGTCTCACCATGTTGGCCAGCCTGGTCTTGAACTCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGTGTGAGCCACCGCGCCCAGCCATTTTTTTGTGTTTTTGGTAGAGACAGGGTTTCATCATGTTCCCCAGGCTGGTCTTGAACTCCTGAGCTCAAGCAATCTGCCTACCTCGGCCTCCCAAAGTGCTGGGATTATAGGTGTGAGCCACCATGCCTGGCCCATTTTTGTGGTTCTTTTATGTCTGACAGGCATGCCTAGGGCAGGGAGGGCACACCTCTGTCTCCACCTTCAAGAGCGCATTTAGGAGGAATGTCGATATGAAAAGAATCAAGCTTTGTCTGAAAGATGCACCAGGACACTCTTCAGTGACATTGGGAAAAAAGAACGCTCACCCTGAATCTTTTTTTTTTTTTTGAGACGAAGTTTCGCTCTTTGTGCCCAAGCTGGAGAGCAGTGGTGCGATCTTGACTCTCTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGCGTGAGCCACTGCACTCGGCTAATTTTGTGTTTTTAGTAGAAATGGGTTTCTCCATGTTGGTCAAGCTGGTCTCGATCACCACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCGGCCCATTCTGAATCTGTCTACCCTAGCAAAACGATCCTTTATTTTACTTTCTTGCCCCATTCGTACACTGGCATGACTGCACTCATAGGGTTCTTCACATTTTATATCCTATTTAACATCTTATAATAAGTATAAAATAGGATTTTGTCCTAAAGAATGTGGTTTAAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCTGGGCATGGTGACTGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGCGGTGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCCGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAATAAATAAAAAGAATGTGGCTTAAAAACCAATGATACTTAAAAATAGAAAATTTCTTTGTCCAAAGTGGATTAGAAGCCACTTTGTTCTAAAACCATTAAACCTTTTTAAACTGTTAGTGGCTCAGCCAGGCACAGTGGCTCATGCCTATAATCTCAGCACTTTGGGAGATTGAGGTGGGCAGATTATCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGACAGGCGTCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCACCTTAGATCACACCGTTGCACTCCCGCCTGAGCGACAGAGCAAGACTCTGTCTCACATGAATAAATAAATAAACCATTAGTGGCTCATGAAATCAATGTAATAGCTTCTGACCAGAACAAAAGAAAGAAAATAGAACACTCAGAATGCCTCTTATGAAGACTAAGTGTAGTTCTGTGAACCTTTTAGTGACGTACATGTATGTAGCACGTCTCCACATGTCATGATGAATGTGCGCTGAGGGTGCAGTCCTGGTGAGCAGGCTACCACCTCAGTTTGCCACGGCTGGTATGCATCTGTGAGCTCCGGAACATCCACATAGCTCTGCCGCCCACAGGAGCAGGTGCACCCACCTTCGAGAAAGTGGGAGAAACAGGTGTGGCGTCCCCACCGAGGGACCTTGAGCACTGGGCAGGCAGAGCCCCAGCGTCCCTTCTGTTGGGTGGTTGGAGGAGTAAGTTTAGGTTATAAGCATGTTTTCTGAACTCTGAAGTGCCACACGAATGTAAGGTCTCACTAAATTACAGATTCAGAAGCTGGGATTGAAAGCACACCACTGCTGGCTTTGGGGGGCAGACAGGTGACTGACAGTCTCGTCACAGTTTCTCAAGAGTCAGCCCTATTCAGGTCAGTGAGCGCAGGTCAGGGATGAGGTCGCTGCACTCTGCGTTCCCCAGTCCTGTATGCGGCGTCAGTTTTGGCAGTCCACGTGTCTCTCCTGTAGAGGATTAGAGGGGCCAGCCCCATGGGTCTGCAGGGTTGGCGCACCGTCTGGGGAAGACACTTGGAATGTGCTTTCGTTGGTGAGCCAGGTCAAGGAAACTTTGGGGAATGTTTGCAGAGAGCTGAGGATGGTTGTCTTGGGGCCTAAGTTTTTCTGACTTAAAAAGCACCTCCTATTTGGGGTCTGTGTGGTAGTGACCCTTTTTCTTTTTTACTTTTTTTTTCGAGACGGAGTCTCACTGCAATGCGCAGGCTGGAGTGCAGTGGTGCAATATCGGCTCACTGCAACCTCTCCTTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGCACCACCACGCCCGGCTAATTTTTGTATTTTTACTAGAGATGGGGTTTCACCATGTTGGTCGGGCTGGTCTCAAACTCCTGACCTCGTGATTCTCCTGCCTTGGCCTCCGAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCTGGCCTTTTTTTTTTTTTTTTTGAAATGGAGTCTTGCCTCATCGCCCAGGCTGGAGTGAAGTGGTATGATCTCAGCTCACTGCAACCTCTGCTTGCTGGGTTCAAGCAATTCTCCTGCTTCAGCCTCCACAGTAGCTGGGATTACAGGCACACACCACAATGTCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCTGCCTGCTTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCTGGTAGTGGCCCTTTTTCAGGGGTTTACAGGTAAACTTTCCTTCCACTTTTTGAGATCTGGGGACATTACATGGGAGTTGGAGGCAAGTCTCGGAAGGCTGCTGGGCCTTGTCCTGGGCGCAGGCTTCTTAGGCCCACCTCAGGGTTGCCAAGGGGCAGGTGTGCAGATCCATAGGGACCAGCACCGGGGCTCTTCCAAGCAGGGCAAAGGTGTTAAGGGAACAGAGGAGAGCAGGGGGATTGGGGGCATCATGAGGATGGAGGGGGACAAGGCCAGATGGGGCTAAACCCAGTGGCCGGGTTTCCTTCTGAGTGCCCAGGATGTTCCTAGGGAGCCCTCAGTGAGGGGTGCCCTATTGTGGGTATGAAGGAGGAGCAGAGAGCAGGGTCGGGGCCAGAGAAGGGGCTAGTGCTGGCAGCATGGAGGCAGAGCCAGTGGAATTGGCCTGTGATTGGACAAGGAATGGGCTCAGAAAGCATCCTGGATAGCTGGGCATGGAGGTGCACTCACCTGTAGTCCCAGCCACTGGAGAAACTGGCGGGAGGATCGCTTGAGCCCAGGACTTCCAACCTGTAGTGTGCATGATCACACTTGTGAATAGACAGCGTACTCCAGCTAGGGAAACATAGTGAGACCCCTGTTTCTAAAGAAAAATGAAAGCCTCCTGGGTTTGGCTGAGTCCCTGGTGAATGGTGGAGCGGTCCTGAGAGCTGGGAAGACCTCTTTCTGGCACAGCAACCGGGGCAGAGGTGAGAGGAGAAGGGCCTCAGCAGTGTTCTGGCCTTTTGGGTTCATCCAAAACTTGCCGGTCCTGGGCCTGCTGGGAGAGGTCAGCCCCTTTCAGGTGAGCAGCTCTGGGGCCGGGTGACCCACGCCACCGTGTCGGGCACACAGTGGTGCTTCGTTTTCCTCACTCCTGGGGCCACAGCCTTCCTGCTGCGGTTCTGCCTGGTGGGTGGGTCCATGCTGCTTTGAGGAGGCAAGTGACCTAAGGCTTCCGGGACACTCTTTTGGCAACTTGGGCCTTGGAAGGACAGCAGAGCAGGTGTGCAGTGTTAGGACCTGTGGCTGAGCTGACCTAACAGCCTGCCTGGAGGCATCAGTCAGGCTCAAGTAGAACAGCAAGGCCCCCATCTTGGGGCTGTCGTCCAGGCACAGAGCGGTCAGCATCTACTGTCCTTCCTGGAGAAAAAAGGGAAAATGCATTTGTCATTTAAATGTTGGAATGGGCCAGGCACGGTGGCTCCTACCTGGAATCCCAGCACATTGGGAGGGCAAGGTTGGATCACATGAGGCCAGGAGTTTAAGACCATCCTGGCCAACATGGTGAAACCCCATCTGAAAAATACAAAAAATTAGCCACCTGTGGTGGCGGGTACCTGTGGTCCCAGTTACTTGGGAGGCTGAAGCATGAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGACAGATTGCTCCACTGCACTCCAGCCTAGGTGACAGAGCGTAAGACTCTGTTTAAGGAAAAAAAAAAAAAAAAAAAAGGAATGGTTCTGAGAAGTCATTCCTTAAGTAAATAAATTGCCACCCCAGGTTGCCCTCTTGGGAGGGGACTCTGGAGGCCGCCCTCCACCCTTAGGCCAGGGCCTGTCAGTCCCTGCCTCCCTGGGCTGCCTCCTGGGGATCTCAGCCGACACCATGCCCCTGTCCTTCCTCCACCTCTTTCCCAGGTTGCTCTGCCTGCAGTCCACCTTCTAGGAGTGAGCCCCCCCACCCCCACTGGAAGTCCCTCTCTAGCTGTCCCCAGTTCCCTGAATCAAGACTGCTTCCCTGCCAGAGAGATGACCCCAATTCCTGCCTCCTCTCACTAGGCTCTCAGGGGCCGGGACTGGGGACAGAGCATACTTAGAGCTAGCCCTGGCCCTCGGGCTGCTTTTGGAAGGAGGAGCATGGCAGGCGAGCATCAGGTGACACGTGCCCCCACGGGGAGCGCAAGAAGGCACTGGAGGCTGTTGCGAAGGAGCAGTGGGTTTCGGGTCCTCATGACCGGCCCTGGTTCCGGGTGTGAGGCTGTGGAGACGCATGGGTCTGCCTTTCTCATCCGCAGCTTCCTGTTGCTACTTGGGAAGCTCCATGTTTGCTGTCCGGTTGTGTTTCGAGTCTGTTCTCTTGGGCGTCTGTGCCGTGGAAGTTCCTTGTGCTTGATAGGGCCAGCACGTGTGAACAATCTTCACTTCAGCTAGAAGCTTTGAAGTCTTTGGACTCAAGCTTTACCCAAACCGCTTATAAGGTTGGGGGGAACCGAGTGCCTGTCTCTCCCCGCTTTTTTTTTTGAGTGGAGTCTCGCTCTGTCACCCAGGCTGGAGCACAGTGGCGCGATCTTGGCTCACTGCAACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCGCCACGCCCGGCTAATTTTTTGTATTTTTAATAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCCCGAACTCCTGATCTCATGATCTGCCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGAGTTGTAGTTCGTTGAGAGGGAGACAGACCTCGAGGAAATGCTTGGTGTGCCTGCCGGGTGACTGCTCGCTCTCCTTGTCTGCTCACTCTGCCCAGTGAATGGGTCTAGGCATCCTCATTGTTCCCTTCCTCTGTCCTCAACATCAGCCCAACCCTGACCAGGCCCCTTCCTGAGGTTCCCACACAACAGGGGCTCCATGTTCAGAAGGGGAGAGAGAAACCCACCTGGGGATGCTCTGTAAGGAGAGCAGAGCCCAGTGGAGTCTCTGCCCGGGACGCTGAGGGAGGAAGAGCTGCGGTTAATTCAAAAGGAAGGGTGAGGTGCAGGTATTGGCTGGATGATGCTCAGAGAAGCAGGAAGAGTGGGCATGGCACTGAGTGGCTGAGGCCATCACTGGTGGCCTTGGTGCTTAGGCAGAAGGAGAGGGCATGGTGCAGGGCGCTGAGGCCGTCTGTGGCTGCCTTGGTGGGGCTTACTGAGTTCTAGTGGACAGCAAGGTGCCAGGGCAGGGCTGGCACATGGAGGGCTCTGAAGGCCATGTGTATCGTCTGAAGTGAGGGAAACCCGTGGTAGCTAAAGGGAATGCACTAGCCAGCCCCAGGTGCGCCACATTCCTGCTCTAGGGGCTGGAGGGAAACCCGTGGTAGCTAAAGGGAATGCACTAGCCAGCCCCAGGTGTGCTACGTTCCGCTCTCGGGGCTGGAGGGGAACCCGTGGTAGCTAAAGGGAGTGCACTAGGCAGCCCCAGGTGTGCTACGTTCCCGCTCTCGGGGCTGGAGGGAAACCCGTGGTAGCTAAAGGGAATGCACTAGGCAGCCCCAGGTGTGCTACGTTCCCGCTCTCAGGGCTGGAGGGGAACCCGTGGTAGCTAAAGGGAGTGCACTAGCCAGCTCCAGGTGTGCTACGTTCCGCTCTCGGGGCTGGAGGGGAACCCGTGGTAGCTATAGGGAGTGCACTAGCCAGCCTCAGGTGTGCTACGTTCCCGCTCTCGGGGCTGGAGGGGAACCCGTGGTAGCTAAAGGGAGTGCACTAGCCAGCCTCAGGTGTGCTACGTTCCCGCTCTCGGGGCTGGAGGGGAATCCGTGGTAGCTATAGGGAGTGCACTAGCCAGCCTCAGATGTGCTACGTTCCCGCTCTCAGGGCTGGAGGGGAACCCGTGGTAGCTAAAGGGAGTGCACTAGCCAGCTCCAGGTGTGCTACATTCCCGCTCTCGGGGCTGGAGGGGAACCCGTGGTAGCTAAAGGGAGTGCACTAGCCAGCCCCAGGTGTGCTACATTCCCGCTCTAGGGGCTGGTCTGGCGGCATGGCTCTCTCCTGAGTGCCTTCAGAGCCTGAGTGCCAGCAGGCAGGCGTCTCCTGCCCAGTGGGTTTGGTAAGATATATTTCAGAAGGCATCCACCACTCTAAAACATGCTTATTGCAGGAACCATGGGGGAGACCAAAGGGCCTAGAGCCTTGAGAACCTCTGACCATTAGTGTTAACAGGAAGGCAGCCTGTTCCCCTAGCTGGGGAGGGGGTTGTGCGTGGCAGGAAGCCCGTGCGTCTGTGTCTCTTTGGAGCTGTGGGTTGGTTGTGTGGATGCCAGCTGTGTGGTCCCCAGCCTCACTGAGCCTGAGTTTCCATACTAGCGGCGGGAGATGGGACTAGAGGGTCTCCAAGGCTCCCTGAAGCTCTGCGATTCTGCTTCTCTGAGTCTTGACCGCAGGTCAGTGGGGACCCGGCCCCTCACCATCGCCTGCTACTGATCACCATTGGTTTGGTTTTGTCTCGAGGACTGTTCTGGAATTGAGGTGTAACGTGCTGTGTGTTCTTCCTTAG
Seq C2 exon
GGCTTTGTTCGCGGGGGTCACAGCTCTCATGGCTGCAGCTAGCGTGACCCCCCCTGGCTCCCTGGAGTTGCTACAGCCCGGCTTCTCCAAGACCCTCCTGGGGACCAAGCTGGAAGCCAAGTACCTGTGCTCCGCCTGCAGAAACGTCCTCCGCAGGCCCTTCCAGGCGCAGTGTGGCCACCGGTACTGCTCCTTCTGCCTGGCCAGCATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127191-TRAF2:NM_021138:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(74.4=46.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)