BtaINT0152630 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009948 | TRIM25
Description
Bos taurus tripartite motif containing 25 (TRIM25), mRNA. [Source:RefSeq mRNA;Acc:NM_001100336]
Coordinates
chr19:7942549-7942803:-
Coord C1 exon
chr19:7942726-7942803
Coord A exon
chr19:7942648-7942725
Coord C2 exon
chr19:7942549-7942647
Length
78 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GTTTTCTGTTCCTCCTCCAGGTG
3' ss Score
13.44
Exon sequences
Seq C1 exon
GCTCTGCCTTACTCAACAAGCCTGTCACCTTTGGATCCTCGGAACACTTAGTGAATCCCAAACTAACTGTCCAGGAGG
Seq A exon
GTGAGTTCTGGTGGGCCGTGGACAGTGGAATGCCTGCTCTGAATTTGTTTAGCAAATGGTTTTCTGTTCCTCCTCCAG
Seq C2 exon
GTGCAGCCAAAGCCCCTCCCGTGCCGCCGACCTCAGCGTCTCTCAACGCCAAGGTGCTGGAGAACTTCCTAACCAAGTCCAGGCCGGAGCTCCTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009948:ENSBTAT00000013121:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.353
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCCTTACTCAACAAGC
R:
CTCCGGCCTGGACTTGGTTAG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]