RnoINT0155761 @ rn6
Intron Retention
Gene
ENSRNOG00000002341 | Trim25
Description
tripartite motif-containing 25 [Source:RGD Symbol;Acc:1594396]
Coordinates
chr10:76360098-76360408:+
Coord C1 exon
chr10:76360098-76360220
Coord A exon
chr10:76360221-76360309
Coord C2 exon
chr10:76360310-76360408
Length
89 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTCTCTATTTTGTCTTCTAGCCA
3' ss Score
8.94
Exon sequences
Seq C1 exon
CTGGTGCTGCGGGTGCTGCCGGTGCTGCCGGTGCTGCTGGTGCTGCCGGTCCTACCTCCTACTCTTCCTCATCTAACAAGTTGCCCACCTTTGGAGCTCCTGGACAAGCAACTATCCCTGATG
Seq A exon
GTGAGTCTGTGTGGACAAGTGCCAGGGAATTAGCTACCATTTGTCCCAAGTCCGCCGTTTTGAATACCATTCTCTATTTTGTCTTCTAG
Seq C2 exon
CCACACTCAAACCCAATGCTCCACAACCAAACTCGGCAGCCGTCAAGGCTAAGGTGTTAGAAAACTTCTTAACCATGTCCAGAACAGAGCTTCTGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002341:ENSRNOT00000055674:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=NA C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGGTCCTACCTCCTAC
R:
TCCAGAAGCTCTGTTCTGGACA
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]