MmuINT0165051 @ mm9
Intron Retention
Gene
ENSMUSG00000000275 | Trim25
Description
tripartite motif-containing 25 [Source:MGI Symbol;Acc:MGI:102749]
Coordinates
chr11:88876847-88877131:+
Coord C1 exon
chr11:88876847-88876945
Coord A exon
chr11:88876946-88877032
Coord C2 exon
chr11:88877033-88877131
Length
87 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTCTCTGTTTTGTCTTCTAGCCG
3' ss Score
10.61
Exon sequences
Seq C1 exon
CTGTTGCTCCCGGCCCTCCCTCCCACTTCTCACCTAACAAGTTGCCCACCTTTGGAGCTCCTGGCCAATCACTGGATTCAAAAGCAACTTCCCCTGATG
Seq A exon
GTGAGTGGTGTGCACAGGCGCCAGGGAATTAGGTACCATTTGTCCTGAGTTCCCATCTTGATTACTATTCTCTGTTTTGTCTTCTAG
Seq C2 exon
CCGCACCCAAAGCCAGTGCTGCACAGCCAGACTCTGTAGGAGTCAAGGCTAAGGTGCTAGAAAACTTCTTAACCAAGTCCAGAACGGAGCTTCTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000275-Trim25:NM_009546:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=NA C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTCCCACTTCTCACCTA
R:
GAAGCTCCGTTCTGGACTTGG
Band lengths:
177-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: