BtaINT0153724 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102974240-102975279:-
Coord C1 exon
chr11:102975169-102975279
Coord A exon
chr11:102974363-102975168
Coord C2 exon
chr11:102974240-102974362
Length
806 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGTTTCTGTGTTTTGGTTAGCTC
3' ss Score
6.5
Exon sequences
Seq C1 exon
ACGAAGCTGGAGGACTGCAGGAACATGATCGCAGAGCTGCGCGTGGAGCTGAAGAAGGCCAACAGCAAGGTGTGCCACACCGAGCTGCTGCTCAGCCAGGTGTCCCAGAAG
Seq A exon
GTGAGGGCCGCTGCCTCCTCCAGGCGGGACTTGTGCAGTACCTGTGTGTCTGTGTCTGGGGTGCCCGACGTCCCCACCCCCAAAGGACGTGGGGCAGTGTCTGGAGACAGTTTTGGTTGACGTCTTTGATGCTGCTGACATGGAGCGCAGGCAGGGTACCCCTAAATATCAGACGGTGTGCGGACAGCCCTGCAGCAGGGAGCTGCCCAGCCTGAGCCCCGGGAACTCCTTCTCAATATTTGTTCACATAAATGTGAAGAGTTCGTTCAGCTTTTTGATCCATGATCTTTTCCTCTCTGGGAGTCATTGCACTCTCTATAAATTGCTTACTCAAGAACTGGTTGGGGGACTTCCCTTCCGGTCCAGTGGTTCAGACTGCGCTTCCACTGCAGGGGGCAGAGGTTTGACCCCTGGTCAAGGAACTAAGATCCTGAACGCTGCGCATTGTGGCCAAAAAATAAAAATAAGTTGAAAAAGAACTGGTGGGTTTTCCCTGTGACTTTATTCCCCTGGGCCTTAACATCCCTGCTGTGGGGTTGTCTACGTATCCATCTCCAGGTGTCCTATAGGTGGCCAGTTTTGACACGGAGCATTTGCACTTCTTCCCCTTTGCAGACAGACAGTTTTGATGTGCATTTCTGTCCATTTTTGTTGCCCTTGGATGCCTCCATCCCCACTGGCCACTGTGCCGTGTCCAGTGCCCCCGCCCTGAGTAGTCTGCTCCCAGCTGCTTCCCTGATTCCTGCCCCTTGGCAGGCTTTGTGTCATCAGCTCTTTCACTTTGCTTGTTTCTGTGTTTTGGTTAG
Seq C2 exon
CTCTCAAATAGTGAGTCGGTCCAACAGCAGATGGAGTTCTTGAACAGGCAACTGTTGGTTCTTGGGGAAGTCAACGAGCTGTATTTGGAACAGCTGCAGAACAAGCATTCAGACACCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190:ENSBTAT00000006842:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGCTGGAGGACTGCA
R:
TGGTGGTGTCTGAATGCTTGT
Band lengths:
232-1038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development