RnoINT0156974 @ rn6
Intron Retention
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7260140-7260961:+
Coord C1 exon
chr3:7260140-7260250
Coord A exon
chr3:7260251-7260838
Coord C2 exon
chr3:7260839-7260961
Length
588 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTCTCACTTCCGCCTGGCAGCTC
3' ss Score
8.49
Exon sequences
Seq C1 exon
ACGAAGCTGGAGGACTGCAGAAGCATGATCGCGGAGCTTCGAGTGGAGCTGAAGAAGGCCAACAGCAAGGTGTGCCACACCGAGCTGCTGCTCAGCCAGGTCTCTCAGAAG
Seq A exon
GTAAGAGCAGAGCCCCCCCCCCCCCCCCCAGCCAGGCAGCTGCATTACTTCTTGTACGTCTGTGTTGGTGATCCAGCAGTGAGCGATTCTACCCAAACACATTGGCACCATCTGGAGACAGTGAGTAGGAAGGGCCCGTGGATACTGACGTCCAAGTGCAGCACACTCTCCAGTGCAGATGGTCCTCACAACAAAAGTACCTACTGAGCTGAGGCCAGGCACGCCCATGGGACTCTTTCATACCCTGCTTTTGAAATCTGTTAAGGCTCTTGAGCTGTGACTCTCCATAGGCTTTCAGTGAGACCTGTGTCATATATGCAGAAACAGGTTAGTTCACTGGGCTTCACATAGCTGCCCCGCTCCAGTGTTCTCGGACTGGCTATGTTGAAATGCATCCATGTTGCTTCTGTGCAGAGAACAACGCAGATGTGTTTCTGCTGCCCTTGGTGCCTTCCTCTCTATTAGCCATGGACTCAGGGGAGTGGTCTGCTCTGCCCTGCAGTGCACTGTGCTCCTCAGTAGTTACTGTCACTGTCCATTGCTAGTTCTGCCATGCTGACCTTGCACTTTCTCACTTCCGCCTGGCAG
Seq C2 exon
CTCTCCAATAGTGAGTCAGTGCAGCAGCAGATGGAGTTCTTGAATAGGCAGCTTCTGGTGCTCGGGGAGGTCAATGAGCTGTACCTGGAGCAGCTGCAGAGCAAGCATCCTGACACCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470:ENSRNOT00000016904:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGCTGGAGGACTGCA
R:
TTGGTGGTGTCAGGATGCTTG
Band lengths:
233-821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]