BtaINT0153727 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102967916-102968349:-
Coord C1 exon
chr11:102968162-102968349
Coord A exon
chr11:102968078-102968161
Coord C2 exon
chr11:102967916-102968077
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
GGTGGGTCCTTGTCTTTCAGAGG
3' ss Score
7.09
Exon sequences
Seq C1 exon
GAAGTAGAAATGATGAAGGCTGCATATCGGAAAGAGCTAGAAAAAAACAGAAGCCACGTCCTCCAGCAGAATCAGAGGCTTGATACCTGTCAGAAGCGGATTTTGGAACTGGAATCTCATCTGGCTAAGAAAGACCACCTTCTTTTAGAACAGAAAAAGTATCTAGAGGATGTCAAACTGCAGGCAAG
Seq A exon
GTAACTGTGGCGGGGAGGCTCCTGCTGCGATGCATTTGCCGAGTAGAACCTCCTACACTCTGGCGGTGGGTCCTTGTCTTTCAG
Seq C2 exon
AGGACAGCTACAGGCTGCAGAGAGCAGGTATGAGGCCCAAAAGAGGATCACCCAGGTGTTTGAATTGGAGATCTTAGATTTATACGGCAAGTTGGAGAAGGATGGCCTCCTGAAAAAACTTGAAGAACAAAAACCAGAAGCAGCTGAAGCAGCAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190:ENSBTAT00000006842:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGTCAAACTGCAGGCA
R:
CTGCTTCAGCTGCTTCTGGTT
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development