RnoINT0156976 @ rn6
Intron Retention
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7263624-7264043:+
Coord C1 exon
chr3:7263624-7263811
Coord A exon
chr3:7263812-7263881
Coord C2 exon
chr3:7263882-7264043
Length
70 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACT
5' ss Score
5.88
3' ss Seq
AACCACGCCCTGTCTTTCAGTGG
3' ss Score
6.49
Exon sequences
Seq C1 exon
GAAGTAGAAATGATGAAAACTGCTTATCGGAAAGAACTAGAGAAAAACAGAAGCCACCTTCTCCAGCAGAACCAGAGGCTGGATGCCTCACAGAGGCGAGTTTTAGAACTGGAATCTCTTCTGGCCAAGAAAGACCACCTTCTCCTAGAGCAGAAGAAGTACCTTGAGGATGTCAAGAGCCAGGCGAG
Seq A exon
GTGACTCACTGGAAAGGTCTGGGTGTGAGTGGGGTCCCTTCCGTATTCTGAACCACGCCCTGTCTTTCAG
Seq C2 exon
TGGACAGCTGCTGGCTGCAGAGAGCAGGTATGAGGCTCAGAGAAAGATCACCCGGGTGTTGGAACTGGAGATCCTAGACTTGTATGGTAGATTGGAGAAAGATGGCCGCCTACAGAAACTAGAAGAGGACAGAGCAGAGGCAGCAGAGGCAGCTGAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470:ENSRNOT00000016904:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.309
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCCAAGAAAGACCACCT
R:
GCGGCCATCTTTCTCCAATCT
Band lengths:
178-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]