BtaINT0153735 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102982723-102983285:-
Coord C1 exon
chr11:102983173-102983285
Coord A exon
chr11:102982835-102983172
Coord C2 exon
chr11:102982723-102982834
Length
338 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGC
5' ss Score
6.23
3' ss Seq
CCTGCCTGTTAACTTCCTAGGCT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GGAATGCTACTTCTACCCCCTACTCTACTTCTCGGCTGACGTTAAACACGCCAGGGCAGCTACCTCAGACTCTGAGTTCCCCGTCGACACGGCTATTAGCTGAGCCGCCACAA
Seq A exon
GTACGCTGTGAACTAGTGTGCCTGCTTTCTTCTCTACTTGCTGGTGAAGCTGGCCTTCGGGGTCAGGGTGTAGCCTGTGATTGGGAAAATCTCTCACTGCTTGTTTCAGGAGTTAGTTTTAAGGATGTGTCATGTTTGCAGAGAAAGTTAACTGTTGCCACTTGGGTTTCTCTTGGCGTCTAGGCTTAGAAAATGTAACGTGTCTCTTGATAAAGCTTTAGTAAGATTCCTTTTCCCAGTTGAAAGGCTAAATTTAAAATGATCGTTGGTCACAGGCTTGTACCTCGGGAGGTGGTGGTGTTTGATTCTTGTTGTTGACCTGCCTGTTAACTTCCTAG
Seq C2 exon
GCTACTCTTTGGAGCCCATCTGCAGTTTGTGGGATGACCACTCCTCCAACTTCTCCTGGAAATGTCCCACCTGATCTGTCACATCCTTACAGTAAAGTCTTTGGTACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190:ENSBTAT00000006842:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.921
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.2=100)
A:
NA
C2:
PF043887=Hamartin=FE(5.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGCTACTTCTACCCCCT
R:
CAGTTGTACCAAAGACTTTACTGT
Band lengths:
225-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development